HL_9DFC_211
3D structure
- PDB id
- 9DFC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- G(5MU)(PSU)CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- 9DFC|1|2y|C|56, 9DFC|1|2y|G|57
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9DFC_211 not in the Motif Atlas
- Homologous match to HL_6PMO_005
- Geometric discrepancy: 0.3584
- The information below is about HL_6PMO_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.4
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 143
Unit IDs
9DFC|1|2y|G|53
9DFC|1|2y|5MU|54
9DFC|1|2y|PSU|55
9DFC|1|2y|C|56
9DFC|1|2y|G|57
9DFC|1|2y|A|58
9DFC|1|2y|U|59
9DFC|1|2y|U|60
9DFC|1|2y|C|61
Current chains
- Chain 2y
- E-site Deacylated tRNAphe
Nearby chains
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: