HL_9DFD_034
3D structure
- PDB id
- 9DFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GUUAAUAUUC
- Length
- 10 nucleotides
- Bulged bases
- 9DFD|1|1A|U|1396, 9DFD|1|1A|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9DFD_034 not in the Motif Atlas
- Homologous match to HL_9DFE_034
- Geometric discrepancy: 0.0802
- The information below is about HL_9DFE_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77449.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
9DFD|1|1A|G|1389
9DFD|1|1A|U|1390
9DFD|1|1A|U|1391
9DFD|1|1A|A|1392
9DFD|1|1A|A|1393
9DFD|1|1A|U|1394
9DFD|1|1A|A|1395
9DFD|1|1A|U|1396
9DFD|1|1A|U|1397
9DFD|1|1A|C|1398
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1X
- 50S ribosomal protein L23
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