9DFE Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9DFE_001 | 1/1A/59:68 | Pseudoknot with intercalation HL_93438.2 | ||
| HL_9DFE_002 | 1/1A/87:95 | Pseudoknot geometry HL_77600.2 | ||
| HL_9DFE_003 | 1/1A/123:128 | No text annotation HL_82710.2 | ||
| HL_9DFE_004 | 1/1A/139:142 | No text annotation HL_71391.1 | ||
| HL_9DFE_005 | 1/1A/194:201 | No text annotation HL_30068.2 | ||
| HL_9DFE_006 | 1/1A/225:230 | No text annotation HL_53890.2 | ||
| HL_9DFE_007 | 1/1A/246:252 | No text annotation HL_37369.2 | ||
| HL_9DFE_009 | 1/1A/305:312 | T-loop with 1 bulged base HL_01609.3 | ||
| HL_9DFE_010 | 1/1A/319:323 | No text annotation HL_75660.5 | ||
| HL_9DFE_011 | 1/1A/327:335 | T-loop with unstacked turn HL_27670.2 | ||
| HL_9DFE_012 | 1/1A/382:392 | No text annotation HL_91503.7 | ||
| HL_9DFE_013 | 1/1A/410:417 | Pseudoknot geometry HL_30680.3 | ||
| HL_9DFE_014 | 1/1A/462:467 | GNRA HL_37824.7 | ||
| HL_9DFE_015 | 1/1A/487:493 | GNRA HL_37824.7 | ||
| HL_9DFE_016 | 1/1A/566:575 | T-loop with 2 stacked bulged bases HL_28252.6 | ||
| HL_9DFE_017 | 1/1A/612:615 | No text annotation HL_42046.2 | ||
| HL_9DFE_018 | 1/1A/629:634 | GNRA HL_37824.7 | ||
| HL_9DFE_019 | 1/1A/641:647 | GNRA HL_37824.7 | ||
| HL_9DFE_020 | 1/1A/712:719 | GNRA wlth tandem sheared HL_81538.2 | ||
| HL_9DFE_021 | 1/1A/744:753 | No text annotation HL_88205.2 | ||
| HL_9DFE_022 | 1/1A/779:785 | No text annotation HL_87954.2 | ||
| HL_9DFE_023 | 1/1A/826:831 | No text annotation HL_55195.3 | ||
| HL_9DFE_024 | 1/1A/884:892 | No text annotation HL_87553.1 | ||
| HL_9DFE_025 | 1/1A/955:962 | GNRA HL_37824.7 | ||
| HL_9DFE_026 | 1/1A/978:985 | No text annotation HL_42998.2 | ||
| HL_9DFE_030 | 1/1A/1222:1227 | GNRA HL_37824.7 | ||
| HL_9DFE_031 | 1/1A/1281:1289 | T-loop with 2 stacked bulged bases HL_28252.6 | ||
| HL_9DFE_032 | 1/1A/1324:1330 | Pseudoknot geometry with 3' bulge HL_57176.2 | ||
| HL_9DFE_033 | 1/1A/1363:1368 | GNRA HL_37824.7 | ||
| HL_9DFE_034 | 1/1A/1389:1398 | No text annotation HL_81545.2 | ||
| HL_9DFE_035 | 1/1A/1451:1459 | Mini UNCG with extended bulge HL_22622.1 | ||
| HL_9DFE_036 | 1/1A/1492:1498 | Pseudoknot geometry with 3' bulge HL_57176.2 | ||
| HL_9DFE_037 | 1/1A/1565:1568 | Mini UNCG HL_48778.2 | ||
| HL_9DFE_038 | 1/1A/1612:1619 | No text annotation HL_89567.2 | ||
| HL_9DFE_039 | 1/1A/1631:1635 | Pseudoknot geometry with 3' bulge HL_57176.2 | ||
| HL_9DFE_040 | 1/1A/1691:1696 | UNCG HL_34617.5 | ||
| HL_9DFE_041 | 1/1A/1720:1742 | GNRA HL_37824.7 | ||
| HL_9DFE_042 | 1/1A/1752:1756 | No text annotation HL_80709.3 | ||
| HL_9DFE_043 | 1/1A/1777:1787 | No text annotation HL_01962.2 | ||
| HL_9DFE_044 | 1/1A/1806:1811 | GNRA HL_37824.7 | ||
| HL_9DFE_045 | 1/1A/1864:1878 | GNRA HL_37824.7 | ||
| HL_9DFE_046 | 1/1A/1910:1920 | No text annotation HL_25847.2 | ||
| HL_9DFE_047 | 1/1A/1949:1957 | No text annotation HL_20167.2 | ||
| HL_9DFE_048 | 1/1A/2027:2036 | No text annotation HL_61996.2 | ||
| HL_9DFE_050 | 1/1A/2205:2219 | No text annotation HL_32346.3 | ||
| HL_9DFE_051 | 1/1A/2248:2256 | No text annotation HL_85367.2 | ||
| HL_9DFE_052 | 1/1A/2264:2276 | No text annotation HL_91939.2 | ||
| HL_9DFE_198 | 1/1A/2304:2312 | No text annotation HL_50860.2 | ||
| HL_9DFE_054 | 1/1A/2324:2331 | Pseudoknot geometry HL_93324.4 | ||
| HL_9DFE_055 | 1/1A/2355:2362 | GNRA with extra cWW HL_04259.3 | ||
| HL_9DFE_056 | 1/1A/2374:2379 | GNRA HL_37824.7 | ||
| HL_9DFE_057 | 1/1A/2404:2413 | No text annotation HL_53454.2 | ||
| HL_9DFE_058 | 1/1A/2471:2479 | No text annotation HL_32735.2 | ||
| HL_9DFE_059 | 1/1A/2528:2535 | No text annotation HL_31585.3 | ||
| HL_9DFE_060 | 1/1A/2551:2557 | No text annotation HL_30068.2 | ||
| HL_9DFE_061 | 1/1A/2594:2599 | GNRA HL_37824.7 | ||
| HL_9DFE_062 | 1/1A/2658:2663 | GNRA HL_37824.7 | ||
| HL_9DFE_063 | 1/1A/2701:2706 | Other HL HL_22584.5 | ||
| HL_9DFE_064 | 1/1A/2745:2759 | No text annotation HL_74055.2 | ||
| HL_9DFE_065 | 1/1A/2819:2827 | No text annotation HL_64690.6 | ||
| HL_9DFE_066 | 1/1A/2856:2861 | GNRA HL_37824.7 | ||
| HL_9DFE_067 | 1/1B/34:48 | No text annotation HL_97756.2 | ||
| HL_9DFE_068 | 1/1B/38:44 | No text annotation HL_47787.2 | ||
| HL_9DFE_069 | 1/1B/86:91 | GNRA HL_37824.7 | ||
| HL_9DFE_070 | 1/1a/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_9DFE_072 | 1/1a/189:189 | No text annotation | homologous HL_6CZR_075 NA | |
| HL_9DFE_074 | 1/1a/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_9DFE_075 | 1/1a/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.7 | |
| HL_9DFE_076 | 1/1a/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_9DFE_077 | 1/1a/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_9DFE_078 | 1/1a/379:384 | GNRA | homologous HL_4LFB_010 HL_37824.7 | |
| HL_9DFE_079 | 1/1a/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_9DFE_080 | 1/1a/458:473 | GNRA | homologous HL_4LFB_012 HL_37824.7 | |
| HL_9DFE_081 | 1/1a/522:527 | GNRA variation | homologous HL_4LFB_033 HL_37824.7 | |
| HL_9DFE_082 | 1/1a/617:623 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_9DFE_083 | 1/1a/689:698 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
| HL_9DFE_084 | 1/1a/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.7 | |
| HL_9DFE_085 | 1/1a/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_9DFE_086 | 1/1a/838:848 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_9DFE_087 | 1/1a/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_9DFE_088 | 1/1a/897:902 | GNRA | homologous HL_5J7L_020 HL_37824.7 | |
| HL_9DFE_089 | 1/1a/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_9DFE_090 | 1/1a/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_9DFE_092 | 1/1a/1076:1081 | GNRA | homologous HL_4LFB_024 HL_37824.7 | |
| HL_9DFE_093 | 1/1a/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_9DFE_095 | 1/1a/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_9DFE_096 | 1/1a/1265:1270 | GNRA | homologous HL_5J7L_027 HL_37824.7 | |
| HL_9DFE_097 | 1/1a/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_9DFE_098 | 1/1a/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_9DFE_099 | 1/1a/1445:1457 | No text annotation | homologous HL_6CZR_102 NA | |
| HL_9DFE_100 | 1/1a/1515:1520 | GNRA | homologous HL_4LFB_032 HL_37824.7 | |
| HL_9DFE_101 | 1/2A/59:68 | No text annotation | homologous HL_9DFE_001 HL_93438.2 | |
| HL_9DFE_102 | 1/2A/87:95 | No text annotation | homologous HL_9DFE_002 HL_77600.2 | |
| HL_9DFE_103 | 1/2A/123:128 | No text annotation | homologous HL_9DFE_003 HL_82710.2 | |
| HL_9DFE_104 | 1/2A/139:142 | No text annotation | homologous HL_9DFE_004 HL_71391.1 | |
| HL_9DFE_105 | 1/2A/194:201 | No text annotation | homologous HL_9DFE_005 HL_30068.2 | |
| HL_9DFE_106 | 1/2A/225:230 | No text annotation | homologous HL_7A0S_007 HL_53890.2 | |
| HL_9DFE_107 | 1/2A/246:252 | No text annotation | homologous HL_9DFE_007 HL_37369.2 | |
| HL_9DFE_108 | 1/2A/271:271 | No text annotation | homologous HL_9DFE_008 NA | |
| HL_9DFE_109 | 1/2A/305:312 | No text annotation | homologous HL_9DFE_009 HL_01609.3 | |
| HL_9DFE_110 | 1/2A/319:323 | No text annotation | geometric HL_8C3A_006 NA | |
| HL_9DFE_111 | 1/2A/327:335 | No text annotation | homologous HL_9DFE_011 HL_27670.2 | |
| HL_9DFE_112 | 1/2A/383:391 | No text annotation | ||
| HL_9DFE_113 | 1/2A/410:417 | No text annotation | homologous HL_9DFE_013 HL_30680.3 | |
| HL_9DFE_114 | 1/2A/462:467 | GNRA | homologous HL_9DFE_014 HL_37824.7 | |
| HL_9DFE_115 | 1/2A/487:493 | GNRA | homologous HL_9DFE_015 HL_37824.7 | |
| HL_9DFE_116 | 1/2A/566:575 | T-loop with 2 stacked bulged bases | homologous HL_9DFE_016 HL_28252.6 | |
| HL_9DFE_117 | 1/2A/612:615 | No text annotation | homologous HL_9DFE_017 HL_42046.2 | |
| HL_9DFE_118 | 1/2A/629:634 | GNRA | homologous HL_9DFE_018 HL_37824.7 | |
| HL_9DFE_119 | 1/2A/641:647 | GNRA | homologous HL_9DFE_019 HL_37824.7 | |
| HL_9DFE_120 | 1/2A/712:719 | No text annotation | homologous HL_9DFE_020 HL_81538.2 | |
| HL_9DFE_121 | 1/2A/744:753 | No text annotation | homologous HL_9DFE_021 HL_88205.2 | |
| HL_9DFE_122 | 1/2A/779:785 | No text annotation | homologous HL_9DFE_022 HL_87954.2 | |
| HL_9DFE_123 | 1/2A/826:831 | No text annotation | homologous HL_9DFE_023 HL_55195.3 | |
| HL_9DFE_124 | 1/2A/884:892 | No text annotation | homologous HL_9DFE_024 HL_87553.1 | |
| HL_9DFE_125 | 1/2A/955:962 | GNRA | homologous HL_9DFE_025 HL_37824.7 | |
| HL_9DFE_126 | 1/2A/978:985 | No text annotation | homologous HL_9DFE_026 HL_42998.2 | |
| HL_9DFE_127 | 1/2A/1222:1227 | GNRA | homologous HL_9DFE_030 HL_37824.7 | |
| HL_9DFE_128 | 1/2A/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_9DFE_031 HL_28252.6 | |
| HL_9DFE_129 | 1/2A/1324:1330 | No text annotation | homologous HL_9DFE_032 HL_57176.2 | |
| HL_9DFE_130 | 1/2A/1363:1368 | GNRA | homologous HL_9DFE_033 HL_37824.7 | |
| HL_9DFE_131 | 1/2A/1389:1398 | No text annotation | homologous HL_9DFE_034 HL_81545.2 | |
| HL_9DFE_132 | 1/2A/1451:1459 | No text annotation | homologous HL_9DFE_035 HL_22622.1 | |
| HL_9DFE_133 | 1/2A/1492:1498 | No text annotation | homologous HL_9DFE_036 HL_57176.2 | |
| HL_9DFE_134 | 1/2A/1565:1568 | Mini UNCG | homologous HL_9DFE_037 HL_48778.2 | |
| HL_9DFE_135 | 1/2A/1612:1619 | No text annotation | homologous HL_9DFE_038 HL_89567.2 | |
| HL_9DFE_136 | 1/2A/1631:1635 | No text annotation | homologous HL_9DFE_039 HL_57176.2 | |
| HL_9DFE_137 | 1/2A/1691:1696 | UNCG | homologous HL_9DFE_040 HL_34617.5 | |
| HL_9DFE_138 | 1/2A/1720:1742 | GNRA | homologous HL_9DFE_041 HL_37824.7 | |
| HL_9DFE_139 | 1/2A/1752:1756 | No text annotation | homologous HL_9DFE_042 HL_80709.3 | |
| HL_9DFE_140 | 1/2A/1777:1787 | No text annotation | homologous HL_9DFE_043 HL_01962.2 | |
| HL_9DFE_141 | 1/2A/1806:1811 | GNRA | homologous HL_9DFE_044 HL_37824.7 | |
| HL_9DFE_142 | 1/2A/1864:1878 | GNRA | homologous HL_9DFE_045 HL_37824.7 | |
| HL_9DFE_143 | 1/2A/1910:1920 | No text annotation | homologous HL_9DFE_046 HL_25847.2 | |
| HL_9DFE_144 | 1/2A/1949:1957 | No text annotation | homologous HL_9DFE_047 HL_20167.2 | |
| HL_9DFE_145 | 1/2A/2027:2036 | No text annotation | homologous HL_9DFE_048 HL_61996.2 | |
| HL_9DFE_147 | 1/2A/2205:2219 | No text annotation | homologous HL_9DFE_050 HL_32346.3 | |
| HL_9DFE_148 | 1/2A/2248:2256 | No text annotation | homologous HL_9DFE_051 HL_85367.2 | |
| HL_9DFE_149 | 1/2A/2264:2276 | No text annotation | homologous HL_9DFE_052 HL_91939.2 | |
| HL_9DFE_200 | 1/2A/2304:2312 | No text annotation | homologous HL_9DFE_198 HL_50860.2 | |
| HL_9DFE_151 | 1/2A/2324:2331 | Pseudoknot geometry | homologous HL_9DFE_054 HL_93324.4 | |
| HL_9DFE_152 | 1/2A/2355:2362 | No text annotation | homologous HL_9DFE_055 HL_04259.3 | |
| HL_9DFE_153 | 1/2A/2374:2379 | GNRA | homologous HL_9DFE_056 HL_37824.7 | |
| HL_9DFE_154 | 1/2A/2404:2413 | No text annotation | homologous HL_9DFE_057 HL_53454.2 | |
| HL_9DFE_155 | 1/2A/2471:2479 | No text annotation | homologous HL_9DFE_058 HL_32735.2 | |
| HL_9DFE_156 | 1/2A/2528:2535 | No text annotation | homologous HL_9DFE_059 HL_31585.3 | |
| HL_9DFE_157 | 1/2A/2551:2557 | No text annotation | homologous HL_9DFE_060 HL_30068.2 | |
| HL_9DFE_158 | 1/2A/2594:2599 | GNRA | homologous HL_9DFE_061 HL_37824.7 | |
| HL_9DFE_159 | 1/2A/2658:2663 | GNRA | homologous HL_5J7L_197 HL_37824.7 | |
| HL_9DFE_160 | 1/2A/2701:2706 | Other HL | homologous HL_9DFE_063 HL_22584.5 | |
| HL_9DFE_161 | 1/2A/2745:2759 | No text annotation | homologous HL_9DFE_064 HL_74055.2 | |
| HL_9DFE_162 | 1/2A/2819:2827 | No text annotation | homologous HL_9DFE_065 HL_64690.6 | |
| HL_9DFE_163 | 1/2A/2856:2861 | GNRA | homologous HL_9DFE_066 HL_37824.7 | |
| HL_9DFE_164 | 1/2B/34:48 | No text annotation | geometric HL_8VTW_208 NA | |
| HL_9DFE_165 | 1/2B/38:44 | No text annotation | homologous HL_9DFE_068 HL_47787.2 | |
| HL_9DFE_166 | 1/2B/86:91 | GNRA | homologous HL_9DFE_069 HL_37824.7 | |
| HL_9DFE_167 | 1/2a/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_9DFE_168 | 1/2a/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.7 | |
| HL_9DFE_169 | 1/2a/189:189 | No text annotation | homologous HL_4LFB_004 HL_48417.5 | |
| HL_9DFE_170 | 1/2a/201:216 | Mini UNCG | homologous HL_6CZR_234 NA | |
| HL_9DFE_171 | 1/2a/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_9DFE_172 | 1/2a/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.7 | |
| HL_9DFE_173 | 1/2a/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_9DFE_174 | 1/2a/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_9DFE_175 | 1/2a/379:384 | GNRA | homologous HL_5J7L_010 HL_37824.7 | |
| HL_9DFE_176 | 1/2a/419:424 | No text annotation | homologous HL_6CZR_082 NA | |
| HL_9DFE_177 | 1/2a/458:473 | GNRA | homologous HL_4LFB_012 HL_37824.7 | |
| HL_9DFE_178 | 1/2a/522:527 | GNRA variation | homologous HL_4LFB_033 HL_37824.7 | |
| HL_9DFE_179 | 1/2a/617:623 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_9DFE_180 | 1/2a/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_9DFE_181 | 1/2a/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.7 | |
| HL_9DFE_182 | 1/2a/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_9DFE_183 | 1/2a/838:848 | Mini UNCG | homologous HL_4LFB_018 HL_48778.2 | |
| HL_9DFE_184 | 1/2a/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_9DFE_185 | 1/2a/897:902 | GNRA | homologous HL_5J7L_020 HL_37824.7 | |
| HL_9DFE_186 | 1/2a/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_9DFE_189 | 1/2a/1076:1081 | GNRA | homologous HL_4LFB_024 HL_37824.7 | |
| HL_9DFE_192 | 1/2a/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_9DFE_193 | 1/2a/1265:1270 | GNRA | homologous HL_5J7L_027 HL_37824.7 | |
| HL_9DFE_194 | 1/2a/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_9DFE_195 | 1/2a/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_9DFE_196 | 1/2a/1445:1457 | No text annotation | homologous HL_6CZR_102 NA | |
| HL_9DFE_197 | 1/2a/1515:1520 | GNRA | homologous HL_4LFB_032 HL_37824.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9DFE_008 | No text annotation | ||
| HL_9DFE_027 | No text annotation | ||
| HL_9DFE_028 | GNRA wlth tandem sheared | ||
| HL_9DFE_029 | No text annotation | ||
| HL_9DFE_049 | No text annotation | ||
| HL_9DFE_053 | No text annotation | ||
| HL_9DFE_071 | GNRA | ||
| HL_9DFE_073 | Mini UNCG | ||
| HL_9DFE_091 | No text annotation | ||
| HL_9DFE_199 | No text annotation | ||
| HL_9DFE_094 | No text annotation | ||
| HL_9DFE_146 | No text annotation | ||
| HL_9DFE_150 | No text annotation | ||
| HL_9DFE_187 | GNRA | ||
| HL_9DFE_188 | No text annotation | ||
| HL_9DFE_190 | T-loop related | ||
| HL_9DFE_191 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9DFE_001 | 1/1A/24:30, 1/1A/510:516 | Triple sheared with non-canonical cWW IL_04021.2 | ||
| IL_9DFE_002 | 1/1A/36:37, 1/1A/442:444 | Single bulged A IL_31462.5 | ||
| IL_9DFE_348 | 1/1A/42:43, 1/1A/434:436 | Minor groove platform IL_51454.2 | ||
| IL_9DFE_004 | 1/1A/81:85, 1/1A/97:105 | Kink-turn IL_01488.3 | ||
| IL_9DFE_005 | 1/1A/183:184, 1/1A/212:214 | Single stack bend IL_90729.1 | ||
| IL_9DFE_006 | 1/1A/188:194, 1/1A/201:208 | 8x7 Sarcin-Ricin; G-bulge IL_04346.10 | ||
| IL_9DFE_007 | 1/1A/239:245, 1/1A/253:258 | No text annotation IL_26307.2 | ||
| IL_9DFE_008 | 1/1A/272:272, 1/1A/363:364 | Major groove platform IL_48076.6 | ||
| IL_9DFE_009 | 1/1A/280:284, 1/1A/357:360 | No text annotation IL_99646.2 | ||
| IL_9DFE_010 | 1/1A/288:290, 1/1A/350:353 | No text annotation IL_85599.2 | ||
| IL_9DFE_011 | 1/1A/293:295, 1/1A/343:347 | No text annotation IL_69440.3 | ||
| IL_9DFE_012 | 1/1A/481:484, 1/1A/496:509 | No text annotation IL_81516.2 | ||
| IL_9DFE_013 | 1/1A/564:566, 1/1A/575:577 | Isolated non-canonical cWW pair IL_07785.1 | ||
| IL_9DFE_014 | 1/1A/606:610, 1/1A/618:622 | No text annotation IL_66798.2 | ||
| IL_9DFE_015 | 1/1A/672:674, 1/1A/806:808 | Isolated non-canonical cWW pair IL_87907.2 | ||
| IL_9DFE_016 | 1/1A/674:678, 1/1A/799:806 | No text annotation IL_54041.2 | ||
| IL_9DFE_017 | 1/1A/697:698, 1/1A/763:765 | Single bulged A IL_31462.5 | ||
| IL_9DFE_018 | 1/1A/702:703, 1/1A/728:730 | Single bulged G IL_00225.13 | ||
| IL_9DFE_019 | 1/1A/703:707, 1/1A/724:728 | Triple sheared IL_50730.2 | ||
| IL_9DFE_020 | 1/1A/738:741, 1/1A/756:758 | Major groove platform with extra cWW IL_51387.2 | ||
| IL_9DFE_021 | 1/1A/775:777, 1/1A/787:791 | No text annotation IL_06549.2 | ||
| IL_9DFE_022 | 1/1A/837:838, 1/1A/940:942 | No text annotation IL_90729.1 | ||
| IL_9DFE_023 | 1/1A/844:846, 1/1A/931:934 | Other IL IL_44465.1 | ||
| IL_9DFE_024 | 1/1A/844:850, 1/1A/927:934 | No text annotation IL_68243.1 | ||
| IL_9DFE_025 | 1/1A/846:850, 1/1A/927:931 | No text annotation IL_38507.2 | ||
| IL_9DFE_026 | 1/1A/858:862, 1/1A/915:919 | No text annotation IL_38862.4 | ||
| IL_9DFE_027 | 1/1A/862:863, 1/1A/913:915 | Minor groove platform IL_51454.2 | ||
| IL_9DFE_028 | 1/1A/864:868, 1/1A/909:912 | No text annotation IL_26222.2 | ||
| IL_9DFE_029 | 1/1A/870:872, 1/1A/905:907 | No text annotation IL_42997.3 | ||
| IL_9DFE_030 | 1/1A/875:877, 1/1A/899:902 | No text annotation IL_90351.1 | ||
| IL_9DFE_031 | 1/1A/877:879, 1/1A/898:899 | Minor groove platform IL_51454.2 | ||
| IL_9DFE_032 | 1/1A/880:881, 1/1A/895:897 | Single bulged A IL_31462.5 | ||
| IL_9DFE_033 | 1/1A/952:954, 1/1A/963:965 | Isolated non-canonical cWW pair IL_87907.2 | ||
| IL_9DFE_034 | 1/1A/994:996, 1/1A/1159:1160 | Single bulged C IL_61258.15 | ||
| IL_9DFE_035 | 1/1A/998:1002, 1/1A/1153:1157 | UAA/GAN IL_38507.2 | ||
| IL_9DFE_036 | 1/1A/1004:1011, 1/1A/1150:1151 | No text annotation IL_41203.4 | ||
| IL_9DFE_037 | 1/1A/1011:1013, 1/1A/1149:1150 | Single bulged U IL_89505.4 | ||
| IL_9DFE_038 | 1/1A/1018:1024, 1/1A/1140:1144 | Kink-turn related IL_57188.5 | ||
| IL_9DFE_039 | 1/1A/1024:1030, 1/1A/1124:1140 | No text annotation IL_50715.3 | ||
| IL_9DFE_040 | 1/1A/1031:1034, 1/1A/1121:1123 | No text annotation IL_57744.1 | ||
| IL_9DFE_041 | 1/1A/1043:1051, 1/1A/1108:1112 | Kink-turn IL_99692.2 | ||
| IL_9DFE_044 | 1/1A/1196:1198, 1/1A/1247:1250 | No text annotation IL_42997.3 | ||
| IL_9DFE_045 | 1/1A/1202:1206, 1/1A/1240:1243 | No text annotation IL_68574.4 | ||
| IL_9DFE_046 | 1/1A/1208:1215, 1/1A/1234:1238 | Kink-turn IL_70923.9 | ||
| IL_9DFE_047 | 1/1A/1219:1221, 1/1A/1229:1230 | Single bulged A IL_31462.5 | ||
| IL_9DFE_048 | 1/1A/1262:1269, 1/1A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge IL_04346.10 | ||
| IL_9DFE_049 | 1/1A/1310:1313, 1/1A/1603:1604 | Major groove platform; stack outside cWW IL_50694.7 | ||
| IL_9DFE_050 | 1/1A/1319:1323, 1/1A/1331:1333 | C-loop IL_63596.11 | ||
| IL_9DFE_051 | 1/1A/1351:1355, 1/1A/1376:1380 | UAA/GAN IL_38507.2 | ||
| IL_9DFE_052 | 1/1A/1357:1361, 1/1A/1370:1374 | No text annotation IL_17136.7 | ||
| IL_9DFE_053 | 1/1A/1415:1416, 1/1A/1582:1587 | 180 degree turn IL_00881.1 | ||
| IL_9DFE_054 | 1/1A/1417:1421, 1/1A/1577:1581 | UAA/GAN IL_38507.2 | ||
| IL_9DFE_055 | 1/1A/1433:1435, 1/1A/1557:1560 | No text annotation IL_67095.2 | ||
| IL_9DFE_056 | 1/1A/1437:1440, 1/1A/1551:1555 | No text annotation IL_99646.2 | ||
| IL_9DFE_057 | 1/1A/1448:1450, 1/1A/1462:1463 | Single stack bend IL_26793.1 | ||
| IL_9DFE_058 | 1/1A/1450:1451, 1/1A/1459:1461 | Single bulged A IL_31462.5 | ||
| IL_9DFE_059 | 1/1A/1469:1473, 1/1A/1518:1523 | No text annotation IL_23774.1 | ||
| IL_9DFE_060 | 1/1A/1481:1482, 1/1A/1506:1510 | No text annotation IL_46086.1 | ||
| IL_9DFE_061 | 1/1A/1489:1491, 1/1A/1499:1500 | Single bulged A IL_31462.5 | ||
| IL_9DFE_062 | 1/1A/1526:1529, 1/1A/1540:1546 | No text annotation IL_09044.1 | ||
| IL_9DFE_063 | 1/1A/1651:1656, 1/1A/2004:2006 | No text annotation IL_12566.4 | ||
| IL_9DFE_064 | 1/1A/1663:1665, 1/1A/1995:1997 | No text annotation IL_67095.2 | ||
| IL_9DFE_065 | 1/1A/1666:1669, 1/1A/1993:1994 | Major groove platform; stack outside cWW IL_50694.7 | ||
| IL_9DFE_066 | 1/1A/1666:1674, 1/1A/1990:1994 | No text annotation IL_22854.4 | ||
| IL_9DFE_067 | 1/1A/1669:1674, 1/1A/1990:1993 | No text annotation IL_76758.2 | ||
| IL_9DFE_068 | 1/1A/1686:1691, 1/1A/1696:1702 | No text annotation IL_47346.2 | ||
| IL_9DFE_069 | 1/1A/1770:1771, 1/1A/1980:1982 | Single bulged A IL_31462.5 | ||
| IL_9DFE_070 | 1/1A/1798:1804, 1/1A/1813:1821 | No text annotation IL_17069.5 | ||
| IL_9DFE_071 | 1/1A/1837:1840, 1/1A/1902:1903 | Minor groove platform, major groove intercalation IL_95583.2 | ||
| IL_9DFE_072 | 1/1A/1841:1842, 1/1A/1898:1901 | Stack outside cWW IL_66635.5 | ||
| IL_9DFE_073 | 1/1A/1846:1849, 1/1A/1893:1894 | Minor groove platform IL_95583.2 | ||
| IL_9DFE_074 | 1/1A/1851:1855, 1/1A/1887:1891 | No text annotation IL_89021.2 | ||
| IL_9DFE_075 | 1/1A/1856:1860, 1/1A/1882:1886 | Triple sheared IL_50730.2 | ||
| IL_9DFE_076 | 1/1A/1933:1934, 1/1A/1964:1967 | No text annotation IL_22551.3 | ||
| IL_9DFE_077 | 1/1A/1934:1945, 1/1A/1961:1964 | No text annotation IL_42218.2 | ||
| IL_9DFE_078 | 1/1A/2050:2052, 1/1A/2617:2618 | Major groove platform IL_48076.6 | ||
| IL_9DFE_079 | 1/1A/2054:2057, 1/1A/2611:2615 | No text annotation IL_70335.1 | ||
| IL_9DFE_080 | 1/1A/2067:2069, 1/1A/2442:2443 | Single bulged U IL_89505.4 | ||
| IL_9DFE_081 | 1/1A/2070:2071, 1/1A/2438:2441 | Minor groove platform IL_51454.2 | ||
| IL_9DFE_082 | 1/1A/2081:2083, 1/1A/2236:2239 | No text annotation IL_85599.2 | ||
| IL_9DFE_083 | 1/1A/2085:2087, 1/1A/2232:2234 | Isolated non-canonical cWW pair IL_28037.2 | ||
| IL_9DFE_088 | 1/1A/2297:2299, 1/1A/2317:2321 | No text annotation IL_61476.2 | ||
| IL_9DFE_089 | 1/1A/2350:2353, 1/1A/2364:2367 | Double sheared IL_09705.15 | ||
| IL_9DFE_090 | 1/1A/2401:2403, 1/1A/2414:2415 | Major groove platform IL_48076.6 | ||
| IL_9DFE_091 | 1/1A/2453:2454, 1/1A/2498:2500 | Single stack bend IL_26793.1 | ||
| IL_9DFE_092 | 1/1A/2454:2455, 1/1A/2496:2498 | Major groove platform IL_48076.6 | ||
| IL_9DFE_093 | 1/1A/2457:2459, 1/1A/2493:2494 | Major groove platform IL_48076.6 | ||
| IL_9DFE_094 | 1/1A/2459:2461, 1/1A/2489:2493 | Major groove minor groove platform with extra cWW IL_51387.2 | ||
| IL_9DFE_095 | 1/1A/2466:2470, 1/1A/2480:2484 | No text annotation IL_17948.2 | ||
| IL_9DFE_096 | 1/1A/2507:2508, 1/1A/2580:2582 | Major groove platform IL_07039.3 | ||
| IL_9DFE_097 | 1/1A/2510:2512, 1/1A/2574:2578 | No text annotation IL_07785.1 | ||
| IL_9DFE_098 | 1/1A/2512:2513, 1/1A/2571:2574 | No text annotation IL_42626.2 | ||
| IL_9DFE_099 | 1/1A/2522:2523, 1/1A/2540:2543 | No text annotation IL_02555.1 | ||
| IL_9DFE_100 | 1/1A/2591:2592, 1/1A/2601:2603 | Single bulged A IL_31462.5 | ||
| IL_9DFE_101 | 1/1A/2636:2640, 1/1A/2774:2782 | No text annotation IL_04638.3 | ||
| IL_9DFE_102 | 1/1A/2652:2658, 1/1A/2663:2668 | No text annotation IL_16458.4 | ||
| IL_9DFE_103 | 1/1A/2680:2684, 1/1A/2725:2727 | C-loop IL_63596.11 | ||
| IL_9DFE_104 | 1/1A/2687:2691, 1/1A/2718:2722 | No text annotation IL_23774.1 | ||
| IL_9DFE_105 | 1/1A/2695:2696, 1/1A/2711:2714 | No text annotation IL_42626.2 | ||
| IL_9DFE_106 | 1/1A/2737:2742, 1/1A/2762:2767 | No text annotation IL_49767.8 | ||
| IL_9DFE_107 | 1/1A/2838:2839, 1/1A/2878:2880 | Major groove intercalation IL_61258.15 | ||
| IL_9DFE_108 | 1/1A/2843:2846, 1/1A/2870:2874 | No text annotation IL_75294.1 | ||
| IL_9DFE_109 | 1/1A/2847:2852, 1/1A/2865:2869 | No text annotation IL_70411.2 | ||
| IL_9DFE_110 | 1/1B/17:18, 1/1B/65:67 | Major groove intercalation IL_31462.5 | ||
| IL_9DFE_111 | 1/1B/23:28, 1/1B/56:60 | No text annotation IL_18472.4 | ||
| IL_9DFE_112 | 1/1B/30:31, 1/1B/51:54 | Major groove minor groove platform; mini C-loop IL_68140.4 | ||
| IL_9DFE_113 | 1/1B/34:38, 1/1B/44:48 | No text annotation IL_58103.11 | ||
| IL_9DFE_114 | 1/1B/71:79, 1/1B/98:106 | No text annotation IL_56455.6 | ||
| IL_9DFE_115 | 1/1a/30:32, 1/1a/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.13 | |
| IL_9DFE_116 | 1/1a/44:45, 1/1a/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.5 | |
| IL_9DFE_117 | 1/1a/47:52, 1/1a/359:361 | No text annotation | geometric IL_4LFB_003 IL_14177.2 | |
| IL_9DFE_118 | 1/1a/54:56, 1/1a/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.2 | |
| IL_9DFE_121 | 1/1a/129:131, 1/1a/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_33761.2 | |
| IL_9DFE_122 | 1/1a/132:136, 1/1a/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_9DFE_123 | 1/1a/148:153, 1/1a/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_9DFE_124 | 1/1a/186:188, 1/1a/189:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_9DFE_125 | 1/1a/242:247, 1/1a/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_9DFE_126 | 1/1a/249:252, 1/1a/274:275 | No text annotation | homologous IL_5J7L_015 IL_47074.2 | |
| IL_9DFE_127 | 1/1a/292:293, 1/1a/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_9DFE_128 | 1/1a/367:369, 1/1a/392:393 | Single bulged U | homologous IL_5J7L_017 IL_89505.4 | |
| IL_9DFE_129 | 1/1a/371:375, 1/1a/389:390 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_9DFE_130 | 1/1a/375:376, 1/1a/387:389 | Single bulged G | homologous IL_4LFB_016 IL_00225.13 | |
| IL_9DFE_131 | 1/1a/409:416, 1/1a/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_9DFE_132 | 1/1a/446:450, 1/1a/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_88269.4 | |
| IL_9DFE_133 | 1/1a/450:455, 1/1a/476:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_9DFE_134 | 1/1a/504:511, 1/1a/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_9DFE_135 | 1/1a/515:521, 1/1a/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_54177.4 | |
| IL_9DFE_136 | 1/1a/569:575, 1/1a/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_9DFE_137 | 1/1a/580:584, 1/1a/757:761 | tSH-tHW-tHS | homologous IL_6CZR_135 NA | |
| IL_9DFE_138 | 1/1a/594:596, 1/1a/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_9DFE_139 | 1/1a/597:598, 1/1a/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_9DFE_140 | 1/1a/605:612, 1/1a/628:633 | No text annotation | homologous IL_6CZR_408 NA | |
| IL_9DFE_141 | 1/1a/654:655, 1/1a/751:754 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_50694.7 | |
| IL_9DFE_142 | 1/1a/657:658, 1/1a/747:749 | Major groove platform | homologous IL_6CZR_140 NA | |
| IL_9DFE_143 | 1/1a/662:666, 1/1a/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_9DFE_144 | 1/1a/673:677, 1/1a/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
| IL_9DFE_145 | 1/1a/683:688, 1/1a/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_9DFE_146 | 1/1a/774:778, 1/1a/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_9DFE_147 | 1/1a/779:783, 1/1a/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_9DFE_148 | 1/1a/887:894, 1/1a/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_9DFE_149 | 1/1a/922:923, 1/1a/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_31462.5 | |
| IL_9DFE_150 | 1/1a/925:927, 1/1a/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.13 | |
| IL_9DFE_151 | 1/1a/933:935, 1/1a/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_47078.3 | |
| IL_9DFE_152 | 1/1a/953:954, 1/1a/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_51454.2 | |
| IL_9DFE_153 | 1/1a/993:997, 1/1a/1044:1045 | Minor groove platform | geometric IL_6CZR_151 NA | |
| IL_9DFE_154 | 1/1a/1048:1050, 1/1a/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_89505.4 | |
| IL_9DFE_155 | 1/1a/1052:1056, 1/1a/1204:1206 | No text annotation | homologous IL_6CZR_154 NA | |
| IL_9DFE_156 | 1/1a/1057:1058, 1/1a/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
| IL_9DFE_157 | 1/1a/1060:1061, 1/1a/1195:1197 | Single bulged U | homologous IL_4LFB_046 IL_89505.4 | |
| IL_9DFE_158 | 1/1a/1061:1063, 1/1a/1193:1195 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_28037.2 | |
| IL_9DFE_159 | 1/1a/1124:1127, 1/1a/1145:1149 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_9DFE_161 | 1/1a/1247:1253, 1/1a/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_9DFE_162 | 1/1a/1255:1258, 1/1a/1277:1282 | 180 degree turn | homologous IL_6CZR_161 NA | |
| IL_9DFE_163 | 1/1a/1259:1262, 1/1a/1273:1276 | Double sheared | homologous IL_4LFB_067 IL_09705.15 | |
| IL_9DFE_164 | 1/1a/1303:1308, 1/1a/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_9DFE_165 | 1/1a/1399:1401, 1/1a/1501:1504 | No text annotation | homologous IL_5J7L_058 IL_61438.4 | |
| IL_9DFE_166 | 1/1a/1401:1404, 1/1a/1497:1501 | No text annotation | homologous IL_5J7L_059 IL_65718.4 | |
| IL_9DFE_167 | 1/1a/1405:1407, 1/1a/1494:1496 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 IL_87907.2 | |
| IL_9DFE_168 | 1/1a/1407:1409, 1/1a/1491:1494 | Isolated non-canonical cWW pair | geometric IL_5T3K_001 IL_57744.1 | |
| IL_9DFE_169 | 1/1a/1412:1414, 1/1a/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_9DFE_170 | 1/1a/1416:1419, 1/1a/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_9DFE_171 | 1/1a/1431:1435, 1/1a/1466:1469 | UAA/GAN variation | homologous IL_4LFB_062 IL_77691.5 | |
| IL_9DFE_172 | 1/1a/1435:1437, 1/1a/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_87907.2 | |
| IL_9DFE_173 | 1/1a/1440:1443, 1/1a/1459:1461 | Isolated basepair with bulged bases | homologous IL_6CZR_172 NA | |
| IL_9DFE_174 | 1/2A/24:30, 1/2A/510:516 | No text annotation | homologous IL_9DFE_001 IL_04021.2 | |
| IL_9DFE_175 | 1/2A/36:37, 1/2A/442:444 | Single bulged A | homologous IL_9DFE_002 IL_31462.5 | |
| IL_9DFE_176 | 1/2A/42:43, 1/2A/434:436 | Minor groove platform | homologous IL_7A0S_003 IL_51454.2 | |
| IL_9DFE_177 | 1/2A/81:85, 1/2A/97:105 | No text annotation | homologous IL_9DFE_004 IL_01488.3 | |
| IL_9DFE_178 | 1/2A/183:184, 1/2A/212:214 | Single stack bend | homologous IL_9DFE_005 IL_90729.1 | |
| IL_9DFE_179 | 1/2A/188:194, 1/2A/201:208 | No text annotation | homologous IL_9DFE_006 IL_04346.10 | |
| IL_9DFE_180 | 1/2A/239:245, 1/2A/253:258 | No text annotation | homologous IL_9DFE_007 IL_26307.2 | |
| IL_9DFE_181 | 1/2A/272:272, 1/2A/363:364 | Major groove platform | homologous IL_9DFE_008 IL_48076.6 | |
| IL_9DFE_182 | 1/2A/272:278, 1/2A/362:363 | No text annotation | ||
| IL_9DFE_183 | 1/2A/280:284, 1/2A/357:360 | No text annotation | homologous IL_9DFE_009 IL_99646.2 | |
| IL_9DFE_184 | 1/2A/288:290, 1/2A/350:353 | No text annotation | homologous IL_9DFE_010 IL_85599.2 | |
| IL_9DFE_185 | 1/2A/293:295, 1/2A/343:347 | No text annotation | homologous IL_9DFE_011 IL_69440.3 | |
| IL_9DFE_186 | 1/2A/481:484, 1/2A/496:509 | No text annotation | geometric IL_8VTW_013 NA | |
| IL_9DFE_187 | 1/2A/564:566, 1/2A/575:577 | Isolated non-canonical cWW pair | homologous IL_9DFE_013 IL_07785.1 | |
| IL_9DFE_188 | 1/2A/606:610, 1/2A/618:622 | No text annotation | homologous IL_9DFE_014 IL_66798.2 | |
| IL_9DFE_189 | 1/2A/672:674, 1/2A/806:808 | Isolated non-canonical cWW pair | homologous IL_9DFE_015 IL_87907.2 | |
| IL_9DFE_190 | 1/2A/674:678, 1/2A/799:806 | No text annotation | homologous IL_9DFE_016 IL_54041.2 | |
| IL_9DFE_191 | 1/2A/697:698, 1/2A/763:765 | Single bulged A | homologous IL_9DFE_017 IL_31462.5 | |
| IL_9DFE_192 | 1/2A/702:703, 1/2A/728:730 | Single bulged G | homologous IL_9DFE_018 IL_00225.13 | |
| IL_9DFE_193 | 1/2A/703:707, 1/2A/724:728 | No text annotation | homologous IL_9DFE_019 IL_50730.2 | |
| IL_9DFE_194 | 1/2A/738:741, 1/2A/756:758 | No text annotation | homologous IL_9DFE_020 IL_51387.2 | |
| IL_9DFE_195 | 1/2A/775:777, 1/2A/787:791 | No text annotation | homologous IL_9DFE_021 IL_06549.2 | |
| IL_9DFE_196 | 1/2A/837:838, 1/2A/940:942 | No text annotation | homologous IL_9DFE_022 IL_90729.1 | |
| IL_9DFE_197 | 1/2A/844:846, 1/2A/931:934 | Isolated cWH basepair | geometric IL_8VTW_024 NA | |
| IL_9DFE_198 | 1/2A/844:850, 1/2A/927:934 | No text annotation | geometric IL_8VTW_349 NA | |
| IL_9DFE_199 | 1/2A/846:850, 1/2A/927:931 | No text annotation | homologous IL_9DFE_025 IL_38507.2 | |
| IL_9DFE_200 | 1/2A/858:862, 1/2A/915:919 | No text annotation | homologous IL_9DFE_026 IL_38862.4 | |
| IL_9DFE_201 | 1/2A/862:863, 1/2A/913:915 | Minor groove platform | homologous IL_9DFE_027 IL_51454.2 | |
| IL_9DFE_202 | 1/2A/864:868, 1/2A/909:912 | No text annotation | homologous IL_9DFE_028 IL_26222.2 | |
| IL_9DFE_204 | 1/2A/875:877, 1/2A/899:902 | No text annotation | homologous IL_9DFE_030 IL_90351.1 | |
| IL_9DFE_205 | 1/2A/877:879, 1/2A/898:899 | Minor groove platform | homologous IL_9DFE_031 IL_51454.2 | |
| IL_9DFE_206 | 1/2A/880:881, 1/2A/895:897 | Single bulged A | homologous IL_9DFE_032 IL_31462.5 | |
| IL_9DFE_207 | 1/2A/952:954, 1/2A/963:965 | Isolated non-canonical cWW pair | homologous IL_9DFE_033 IL_87907.2 | |
| IL_9DFE_208 | 1/2A/994:996, 1/2A/1159:1160 | Single bulged C | homologous IL_9DFE_034 IL_61258.15 | |
| IL_9DFE_209 | 1/2A/998:1002, 1/2A/1153:1157 | No text annotation | homologous IL_9DFE_035 IL_38507.2 | |
| IL_9DFE_210 | 1/2A/1004:1011, 1/2A/1150:1151 | No text annotation | homologous IL_9DFE_036 IL_41203.4 | |
| IL_9DFE_211 | 1/2A/1011:1013, 1/2A/1149:1150 | Single bulged U | homologous IL_9DFE_037 IL_89505.4 | |
| IL_9DFE_212 | 1/2A/1018:1024, 1/2A/1140:1144 | No text annotation | homologous IL_9DFE_038 IL_57188.5 | |
| IL_9DFE_213 | 1/2A/1024:1030, 1/2A/1124:1140 | No text annotation | homologous IL_9DFE_039 IL_50715.3 | |
| IL_9DFE_214 | 1/2A/1031:1034, 1/2A/1121:1123 | No text annotation | homologous IL_9DFE_040 IL_57744.1 | |
| IL_9DFE_216 | 1/2A/1055:1057, 1/2A/1081:1104 | No text annotation | ||
| IL_9DFE_217 | 1/2A/1196:1198, 1/2A/1247:1250 | No text annotation | homologous IL_9DFE_044 IL_42997.3 | |
| IL_9DFE_218 | 1/2A/1202:1206, 1/2A/1240:1243 | No text annotation | homologous IL_9DFE_045 IL_68574.4 | |
| IL_9DFE_219 | 1/2A/1208:1215, 1/2A/1234:1238 | Kink-turn | homologous IL_9DFE_046 IL_70923.9 | |
| IL_9DFE_220 | 1/2A/1219:1221, 1/2A/1229:1230 | Single bulged A | homologous IL_9DFE_047 IL_31462.5 | |
| IL_9DFE_221 | 1/2A/1262:1269, 1/2A/2011:2017 | No text annotation | homologous IL_9DFE_048 IL_04346.10 | |
| IL_9DFE_222 | 1/2A/1310:1313, 1/2A/1603:1604 | Major groove platform; stack outside cWW | geometric IL_8VTW_049 NA | |
| IL_9DFE_223 | 1/2A/1319:1323, 1/2A/1331:1333 | C-loop | homologous IL_9DFE_050 IL_63596.11 | |
| IL_9DFE_224 | 1/2A/1351:1355, 1/2A/1376:1380 | No text annotation | homologous IL_9DFE_051 IL_38507.2 | |
| IL_9DFE_225 | 1/2A/1357:1361, 1/2A/1370:1374 | No text annotation | homologous IL_9DFE_052 IL_17136.7 | |
| IL_9DFE_226 | 1/2A/1415:1416, 1/2A/1582:1587 | No text annotation | homologous IL_9DFE_053 IL_00881.1 | |
| IL_9DFE_227 | 1/2A/1417:1421, 1/2A/1577:1581 | No text annotation | homologous IL_9DFE_054 IL_38507.2 | |
| IL_9DFE_228 | 1/2A/1433:1435, 1/2A/1557:1560 | No text annotation | homologous IL_9DFE_055 IL_67095.2 | |
| IL_9DFE_229 | 1/2A/1437:1440, 1/2A/1551:1555 | No text annotation | homologous IL_9DFE_056 IL_99646.2 | |
| IL_9DFE_230 | 1/2A/1448:1450, 1/2A/1462:1463 | Single stack bend | homologous IL_9DFE_057 IL_26793.1 | |
| IL_9DFE_231 | 1/2A/1450:1451, 1/2A/1459:1461 | Single bulged A | homologous IL_9DFE_058 IL_31462.5 | |
| IL_9DFE_232 | 1/2A/1469:1473, 1/2A/1518:1523 | No text annotation | homologous IL_9DFE_059 IL_23774.1 | |
| IL_9DFE_233 | 1/2A/1481:1482, 1/2A/1506:1510 | No text annotation | homologous IL_9DFE_060 IL_46086.1 | |
| IL_9DFE_234 | 1/2A/1489:1491, 1/2A/1499:1500 | Single bulged A | homologous IL_9DFE_061 IL_31462.5 | |
| IL_9DFE_235 | 1/2A/1526:1529, 1/2A/1540:1546 | No text annotation | homologous IL_9DFE_062 IL_09044.1 | |
| IL_9DFE_236 | 1/2A/1651:1656, 1/2A/2004:2006 | No text annotation | homologous IL_9DFE_063 IL_12566.4 | |
| IL_9DFE_237 | 1/2A/1663:1665, 1/2A/1995:1997 | No text annotation | homologous IL_9DFE_064 IL_67095.2 | |
| IL_9DFE_238 | 1/2A/1666:1669, 1/2A/1993:1994 | Major groove platform; stack outside cWW | geometric IL_8VTW_065 NA | |
| IL_9DFE_239 | 1/2A/1666:1674, 1/2A/1990:1994 | No text annotation | geometric IL_8VTW_350 NA | |
| IL_9DFE_240 | 1/2A/1669:1674, 1/2A/1990:1993 | No text annotation | homologous IL_9DFE_067 IL_76758.2 | |
| IL_9DFE_241 | 1/2A/1686:1691, 1/2A/1696:1702 | No text annotation | homologous IL_9DFE_068 IL_47346.2 | |
| IL_9DFE_242 | 1/2A/1770:1771, 1/2A/1980:1982 | Single bulged A | homologous IL_9DFE_069 IL_31462.5 | |
| IL_9DFE_243 | 1/2A/1798:1804, 1/2A/1813:1821 | No text annotation | homologous IL_9DFE_070 IL_17069.5 | |
| IL_9DFE_244 | 1/2A/1837:1840, 1/2A/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_9DFE_071 IL_95583.2 | |
| IL_9DFE_245 | 1/2A/1841:1842, 1/2A/1898:1901 | No text annotation | homologous IL_9DFE_072 IL_66635.5 | |
| IL_9DFE_246 | 1/2A/1846:1849, 1/2A/1893:1894 | Minor groove platform | homologous IL_9DFE_073 IL_95583.2 | |
| IL_9DFE_247 | 1/2A/1851:1855, 1/2A/1887:1891 | No text annotation | homologous IL_9DFE_074 IL_89021.2 | |
| IL_9DFE_248 | 1/2A/1856:1860, 1/2A/1882:1886 | No text annotation | homologous IL_9DFE_075 IL_50730.2 | |
| IL_9DFE_249 | 1/2A/1933:1934, 1/2A/1964:1967 | Bulged stacked bases | geometric IL_5J7L_318 IL_22551.3 | |
| IL_9DFE_250 | 1/2A/1934:1945, 1/2A/1961:1964 | No text annotation | homologous IL_9DFE_077 IL_42218.2 | |
| IL_9DFE_251 | 1/2A/2050:2052, 1/2A/2617:2618 | Major groove platform | homologous IL_9DFE_078 IL_48076.6 | |
| IL_9DFE_252 | 1/2A/2054:2057, 1/2A/2611:2615 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_9DFE_253 | 1/2A/2067:2069, 1/2A/2442:2443 | Single bulged U | homologous IL_9DFE_080 IL_89505.4 | |
| IL_9DFE_254 | 1/2A/2070:2071, 1/2A/2438:2441 | Minor groove platform | homologous IL_9DFE_081 IL_51454.2 | |
| IL_9DFE_255 | 1/2A/2081:2083, 1/2A/2236:2239 | No text annotation | homologous IL_9DFE_082 IL_85599.2 | |
| IL_9DFE_256 | 1/2A/2085:2087, 1/2A/2232:2234 | Isolated non-canonical cWW pair | homologous IL_9DFE_083 IL_28037.2 | |
| IL_9DFE_261 | 1/2A/2297:2299, 1/2A/2317:2321 | No text annotation | homologous IL_9DFE_088 IL_61476.2 | |
| IL_9DFE_262 | 1/2A/2350:2353, 1/2A/2364:2367 | Double sheared | homologous IL_9DFE_089 IL_09705.15 | |
| IL_9DFE_263 | 1/2A/2401:2403, 1/2A/2414:2415 | Major groove platform | homologous IL_9DFE_090 IL_48076.6 | |
| IL_9DFE_264 | 1/2A/2453:2454, 1/2A/2498:2500 | Single stack bend | homologous IL_9DFE_091 IL_26793.1 | |
| IL_9DFE_265 | 1/2A/2454:2455, 1/2A/2496:2498 | Major groove platform | homologous IL_9DFE_092 IL_48076.6 | |
| IL_9DFE_266 | 1/2A/2457:2459, 1/2A/2493:2494 | Major groove platform | homologous IL_9DFE_093 IL_48076.6 | |
| IL_9DFE_267 | 1/2A/2459:2461, 1/2A/2489:2493 | No text annotation | homologous IL_9DFE_094 IL_51387.2 | |
| IL_9DFE_268 | 1/2A/2466:2470, 1/2A/2480:2484 | No text annotation | homologous IL_9DFE_095 IL_17948.2 | |
| IL_9DFE_269 | 1/2A/2507:2508, 1/2A/2580:2582 | No text annotation | homologous IL_9DFE_096 IL_07039.3 | |
| IL_9DFE_270 | 1/2A/2510:2512, 1/2A/2574:2578 | No text annotation | homologous IL_9DFE_097 IL_07785.1 | |
| IL_9DFE_271 | 1/2A/2512:2513, 1/2A/2571:2574 | No text annotation | homologous IL_9DFE_098 IL_42626.2 | |
| IL_9DFE_272 | 1/2A/2522:2523, 1/2A/2540:2543 | No text annotation | homologous IL_9DFE_099 IL_02555.1 | |
| IL_9DFE_273 | 1/2A/2591:2592, 1/2A/2601:2603 | Single bulged A | homologous IL_9DFE_100 IL_31462.5 | |
| IL_9DFE_274 | 1/2A/2636:2640, 1/2A/2774:2782 | No text annotation | homologous IL_9DFE_101 IL_04638.3 | |
| IL_9DFE_275 | 1/2A/2652:2658, 1/2A/2663:2668 | No text annotation | homologous IL_9DFE_102 IL_16458.4 | |
| IL_9DFE_276 | 1/2A/2680:2684, 1/2A/2725:2727 | C-loop | homologous IL_9DFE_103 IL_63596.11 | |
| IL_9DFE_277 | 1/2A/2687:2691, 1/2A/2718:2722 | No text annotation | homologous IL_9DFE_104 IL_23774.1 | |
| IL_9DFE_278 | 1/2A/2695:2696, 1/2A/2711:2714 | No text annotation | homologous IL_9DFE_105 IL_42626.2 | |
| IL_9DFE_279 | 1/2A/2737:2742, 1/2A/2762:2767 | No text annotation | homologous IL_9DFE_106 IL_49767.8 | |
| IL_9DFE_280 | 1/2A/2838:2839, 1/2A/2878:2880 | Major groove intercalation | homologous IL_9DFE_107 IL_61258.15 | |
| IL_9DFE_281 | 1/2A/2843:2846, 1/2A/2870:2874 | No text annotation | homologous IL_9DFE_108 IL_75294.1 | |
| IL_9DFE_282 | 1/2A/2847:2852, 1/2A/2865:2869 | No text annotation | homologous IL_9DFE_109 IL_70411.2 | |
| IL_9DFE_283 | 1/2B/17:18, 1/2B/65:67 | Major groove intercalation | homologous IL_9DFE_110 IL_31462.5 | |
| IL_9DFE_284 | 1/2B/23:28, 1/2B/56:60 | No text annotation | homologous IL_9DFE_111 IL_18472.4 | |
| IL_9DFE_285 | 1/2B/30:31, 1/2B/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_68140.4 | |
| IL_9DFE_286 | 1/2B/34:38, 1/2B/44:48 | No text annotation | homologous IL_9DFE_113 IL_58103.11 | |
| IL_9DFE_287 | 1/2B/71:79, 1/2B/98:106 | No text annotation | homologous IL_9DFE_114 IL_56455.6 | |
| IL_9DFE_288 | 1/2a/30:32, 1/2a/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.13 | |
| IL_9DFE_289 | 1/2a/44:45, 1/2a/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.5 | |
| IL_9DFE_290 | 1/2a/47:52, 1/2a/359:361 | No text annotation | geometric IL_4LFB_003 IL_14177.2 | |
| IL_9DFE_291 | 1/2a/54:56, 1/2a/356:357 | Minor groove platform | homologous IL_5J7L_004 IL_51454.2 | |
| IL_9DFE_292 | 1/2a/63:66, 1/2a/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.4 | |
| IL_9DFE_293 | 1/2a/67:69, 1/2a/100:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_9DFE_294 | 1/2a/129:131, 1/2a/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_33761.2 | |
| IL_9DFE_295 | 1/2a/132:136, 1/2a/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_9DFE_296 | 1/2a/148:153, 1/2a/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_9DFE_297 | 1/2a/186:188, 1/2a/189:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_9DFE_298 | 1/2a/242:247, 1/2a/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_9DFE_299 | 1/2a/249:252, 1/2a/274:275 | No text annotation | homologous IL_5J7L_015 IL_47074.2 | |
| IL_9DFE_300 | 1/2a/292:293, 1/2a/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_9DFE_301 | 1/2a/367:369, 1/2a/392:393 | Single bulged U | homologous IL_4LFB_014 IL_89505.4 | |
| IL_9DFE_302 | 1/2a/371:375, 1/2a/389:390 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_9DFE_303 | 1/2a/375:376, 1/2a/387:389 | Single bulged G | homologous IL_4LFB_016 IL_00225.13 | |
| IL_9DFE_304 | 1/2a/409:416, 1/2a/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_9DFE_305 | 1/2a/446:450, 1/2a/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_88269.4 | |
| IL_9DFE_306 | 1/2a/450:455, 1/2a/476:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_9DFE_307 | 1/2a/504:511, 1/2a/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_9DFE_308 | 1/2a/515:521, 1/2a/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_54177.4 | |
| IL_9DFE_309 | 1/2a/569:575, 1/2a/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_9DFE_310 | 1/2a/580:584, 1/2a/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_9DFE_311 | 1/2a/594:596, 1/2a/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_9DFE_312 | 1/2a/597:598, 1/2a/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_9DFE_313 | 1/2a/605:612, 1/2a/628:633 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_9DFE_314 | 1/2a/654:655, 1/2a/751:754 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_50694.7 | |
| IL_9DFE_315 | 1/2a/657:658, 1/2a/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_9DFE_316 | 1/2a/662:666, 1/2a/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_9DFE_317 | 1/2a/673:677, 1/2a/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
| IL_9DFE_318 | 1/2a/683:688, 1/2a/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_9DFE_319 | 1/2a/774:778, 1/2a/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_9DFE_320 | 1/2a/779:783, 1/2a/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_9DFE_321 | 1/2a/887:894, 1/2a/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_9DFE_322 | 1/2a/922:923, 1/2a/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_31462.5 | |
| IL_9DFE_323 | 1/2a/925:927, 1/2a/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.13 | |
| IL_9DFE_324 | 1/2a/933:935, 1/2a/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_47078.3 | |
| IL_9DFE_325 | 1/2a/953:954, 1/2a/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_51454.2 | |
| IL_9DFE_326 | 1/2a/993:997, 1/2a/1044:1045 | Minor groove platform | geometric IL_4LFB_039 IL_47078.3 | |
| IL_9DFE_327 | 1/2a/1048:1050, 1/2a/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_89505.4 | |
| IL_9DFE_328 | 1/2a/1052:1056, 1/2a/1204:1206 | No text annotation | homologous IL_6CZR_154 NA | |
| IL_9DFE_329 | 1/2a/1057:1058, 1/2a/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_9DFE_330 | 1/2a/1060:1061, 1/2a/1195:1197 | Single bulged U | homologous IL_4LFB_046 IL_89505.4 | |
| IL_9DFE_331 | 1/2a/1061:1063, 1/2a/1193:1195 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_28037.2 | |
| IL_9DFE_334 | 1/2a/1158:1161, 1/2a/1175:1181 | No text annotation | geometric IL_5J7L_053 IL_42032.1 | |
| IL_9DFE_337 | 1/2a/1259:1262, 1/2a/1273:1276 | Double sheared | homologous IL_4LFB_067 IL_09705.15 | |
| IL_9DFE_338 | 1/2a/1303:1308, 1/2a/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_9DFE_339 | 1/2a/1399:1401, 1/2a/1501:1504 | No text annotation | homologous IL_5J7L_058 IL_61438.4 | |
| IL_9DFE_340 | 1/2a/1401:1404, 1/2a/1497:1501 | No text annotation | homologous IL_5J7L_059 IL_65718.4 | |
| IL_9DFE_341 | 1/2a/1405:1407, 1/2a/1494:1496 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 IL_87907.2 | |
| IL_9DFE_342 | 1/2a/1407:1409, 1/2a/1491:1494 | No text annotation | homologous IL_5J7L_364 IL_90351.1 | |
| IL_9DFE_343 | 1/2a/1412:1414, 1/2a/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_9DFE_344 | 1/2a/1416:1419, 1/2a/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_9DFE_345 | 1/2a/1431:1435, 1/2a/1466:1469 | UAA/GAN variation | homologous IL_4LFB_062 IL_77691.5 | |
| IL_9DFE_346 | 1/2a/1435:1437, 1/2a/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_87907.2 | |
| IL_9DFE_347 | 1/2a/1440:1443, 1/2a/1459:1461 | Isolated basepair with bulged bases | homologous IL_6CZR_172 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9DFE_003 | No text annotation | ||
| IL_9DFE_042 | No text annotation | ||
| IL_9DFE_043 | No text annotation | ||
| IL_9DFE_084 | No text annotation | ||
| IL_9DFE_085 | No text annotation | ||
| IL_9DFE_086 | No text annotation | ||
| IL_9DFE_087 | No text annotation | ||
| IL_9DFE_119 | Multiple bulged bases | ||
| IL_9DFE_120 | Isolated non-canonical cWW pair | ||
| IL_9DFE_160 | Minor groove platform | ||
| IL_9DFE_203 | No text annotation | ||
| IL_9DFE_215 | Kink-turn | ||
| IL_9DFE_257 | No text annotation | ||
| IL_9DFE_258 | No text annotation | ||
| IL_9DFE_259 | No text annotation | ||
| IL_9DFE_349 | No text annotation | ||
| IL_9DFE_260 | No text annotation | ||
| IL_9DFE_332 | Minor groove platform | ||
| IL_9DFE_333 | Minor groove platform | ||
| IL_9DFE_335 | No text annotation | ||
| IL_9DFE_336 | 180 degree turn |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9DFE_001 | 1/1A/30:31, 1/1A/474:481, 1/1A/509:510 | No text annotation J3_60031.2 | ||
| J3_9DFE_002 | 1/1A/30:31, 1/1A/474:484, 1/1A/496:510 | No text annotation J3_92134.2 | ||
| J3_9DFE_003 | 1/1A/32:35, 1/1A/445:461, 1/1A/468:473 | No text annotation J3_30040.2 | ||
| J3_9DFE_004 | 1/1A/56:57, 1/1A/70:76, 1/1A/110:114 | No text annotation J3_35667.2 | ||
| J3_9DFE_005 | 1/1A/269:271, 1/1A/271:272, 1/1A/366:370 | No text annotation J3_97971.2 | ||
| J3_9DFE_006 | 1/1A/297:301, 1/1A/316:325, 1/1A/337:341 | No text annotation J3_46299.2 | ||
| J3_9DFE_007 | 1/1A/683:689, 1/1A/773:775, 1/1A/791:794 | No text annotation J3_64189.2 | ||
| J3_9DFE_008 | 1/1A/698:700, 1/1A/732:736, 1/1A/760:763 | No text annotation J3_44724.7 | ||
| J3_9DFE_010 | 1/1A/1298:1303, 1/1A/1625:1627, 1/1A/1639:1642 | No text annotation J3_32852.6 | ||
| J3_9DFE_011 | 1/1A/1306:1309, 1/1A/1605:1611, 1/1A/1620:1622 | No text annotation J3_71677.1 | ||
| J3_9DFE_012 | 1/1A/1344:1350, 1/1A/1381:1385, 1/1A/1402:1403 | No text annotation J3_31965.2 | ||
| J3_9DFE_013 | 1/1A/1424:1429, 1/1A/1564:1565, 1/1A/1568:1574 | No text annotation J3_34864.2 | ||
| J3_9DFE_014 | 1/1A/2091:2093, 1/1A/2196:2200, 1/1A/2223:2228 | No text annotation J3_89368.5 | ||
| J3_9DFE_015 | 1/1A/2282:2284, 1/1A/2384:2395, 1/1A/2421:2427 | No text annotation J3_20992.1 | ||
| J3_9DFE_016 | 1/1A/2295:2297, 1/1A/2321:2323, 1/1A/2332:2337 | No text annotation J3_61124.2 | ||
| J3_9DFE_017 | 1/1A/2517:2520, 1/1A/2545:2547, 1/1A/2561:2567 | No text annotation J3_32601.5 | ||
| J3_9DFE_018 | 1/1A/2789:2791, 1/1A/2805:2811, 1/1A/2889:2894 | No text annotation J3_24127.1 | ||
| J3_9DFE_019 | 1/1A/2814:2815, 1/1A/2831:2836, 1/1A/2882:2886 | No text annotation J3_76911.2 | ||
| J3_9DFE_020 | 1/1B/11:16, 1/1B/68:69, 1/1B/108:110 | No text annotation J3_12003.2 | ||
| J3_9DFE_021 | 1/1a/46:47, 1/1a/361:367, 1/1a/393:395 | No text annotation | geometric J3_5J7L_001 J3_67856.4 | |
| J3_9DFE_022 | 1/1a/46:52, 1/1a/359:367, 1/1a/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_9DFE_023 | 1/1a/586:588, 1/1a/651:654, 1/1a/754:755 | No text annotation | geometric J3_6CZR_016 NA | |
| J3_9DFE_024 | 1/1a/586:588, 1/1a/651:655, 1/1a/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_9DFE_025 | 1/1a/672:673, 1/1a/717:725, 1/1a/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_9DFE_026 | 1/1a/826:829, 1/1a/857:861, 1/1a/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_9DFE_027 | 1/1a/936:939, 1/1a/1344:1350, 1/1a/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_9DFE_028 | 1/1a/943:946, 1/1a/1235:1237, 1/1a/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_9DFE_029 | 1/1a/955:962, 1/1a/973:984, 1/1a/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_9DFE_030 | 1/1a/990:993, 1/1a/1045:1047, 1/1a/1210:1215 | No text annotation | geometric J3_5J7L_007 J3_82572.1 | |
| J3_9DFE_031 | 1/1a/990:997, 1/1a/1044:1047, 1/1a/1210:1215 | No text annotation | homologous J3_6CZR_063 NA | |
| J3_9DFE_033 | 1/1a/1063:1068, 1/1a/1107:1113, 1/1a/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_9DFE_073 | 1/1a/1073:1074, 1/1a/1083:1086, 1/1a/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_9DFE_035 | 1/1a/1116:1118, 1/1a/1155:1161, 1/1a/1175:1184 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
| J3_9DFE_036 | 1/1a/1237:1241, 1/1a/1296:1303, 1/1a/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_9DFE_037 | 1/2A/30:31, 1/2A/474:481, 1/2A/509:510 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_9DFE_038 | 1/2A/30:31, 1/2A/474:484, 1/2A/496:510 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_9DFE_039 | 1/2A/32:35, 1/2A/445:461, 1/2A/468:473 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_9DFE_040 | 1/2A/56:57, 1/2A/70:76, 1/2A/110:114 | No text annotation | homologous J3_9DFE_004 J3_35667.2 | |
| J3_9DFE_041 | 1/2A/269:271, 1/2A/271:272, 1/2A/366:370 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_9DFE_042 | 1/2A/297:301, 1/2A/316:325, 1/2A/337:341 | No text annotation | homologous J3_9DFE_006 J3_46299.2 | |
| J3_9DFE_043 | 1/2A/683:689, 1/2A/773:775, 1/2A/791:794 | No text annotation | homologous J3_9DFE_007 J3_64189.2 | |
| J3_9DFE_044 | 1/2A/698:700, 1/2A/732:736, 1/2A/760:763 | No text annotation | homologous J3_9DFE_008 J3_44724.7 | |
| J3_9DFE_045 | 1/2A/1298:1303, 1/2A/1625:1627, 1/2A/1639:1642 | No text annotation | homologous J3_9DFE_010 J3_32852.6 | |
| J3_9DFE_046 | 1/2A/1306:1309, 1/2A/1605:1611, 1/2A/1620:1622 | No text annotation | homologous J3_9DFE_011 J3_71677.1 | |
| J3_9DFE_047 | 1/2A/1344:1350, 1/2A/1381:1385, 1/2A/1402:1403 | No text annotation | homologous J3_9DFE_012 J3_31965.2 | |
| J3_9DFE_048 | 1/2A/1424:1429, 1/2A/1564:1565, 1/2A/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_9DFE_049 | 1/2A/2091:2093, 1/2A/2196:2200, 1/2A/2223:2228 | No text annotation | homologous J3_9DFE_014 J3_89368.5 | |
| J3_9DFE_050 | 1/2A/2282:2284, 1/2A/2384:2395, 1/2A/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_9DFE_051 | 1/2A/2295:2297, 1/2A/2321:2323, 1/2A/2332:2337 | No text annotation | homologous J3_9DFE_016 J3_61124.2 | |
| J3_9DFE_052 | 1/2A/2517:2520, 1/2A/2545:2547, 1/2A/2561:2567 | No text annotation | homologous J3_9DFE_017 J3_32601.5 | |
| J3_9DFE_053 | 1/2A/2814:2815, 1/2A/2831:2836, 1/2A/2882:2886 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_9DFE_054 | 1/2B/11:16, 1/2B/68:69, 1/2B/108:110 | No text annotation | homologous J3_9DFE_020 J3_12003.2 | |
| J3_9DFE_055 | 1/2a/46:47, 1/2a/361:367, 1/2a/393:395 | No text annotation | geometric J3_4LFB_010 J3_67856.4 | |
| J3_9DFE_056 | 1/2a/46:52, 1/2a/359:367, 1/2a/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_9DFE_057 | 1/2a/586:588, 1/2a/651:654, 1/2a/754:755 | No text annotation | geometric J3_4LFB_011 J3_56052.5 | |
| J3_9DFE_058 | 1/2a/586:588, 1/2a/651:655, 1/2a/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_9DFE_059 | 1/2a/672:673, 1/2a/717:725, 1/2a/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_9DFE_060 | 1/2a/826:829, 1/2a/857:861, 1/2a/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_9DFE_061 | 1/2a/936:939, 1/2a/1344:1350, 1/2a/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_9DFE_062 | 1/2a/943:946, 1/2a/1235:1237, 1/2a/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_9DFE_063 | 1/2a/955:962, 1/2a/973:984, 1/2a/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_9DFE_064 | 1/2a/990:993, 1/2a/1045:1047, 1/2a/1210:1215 | No text annotation | geometric J3_4LFB_005 J3_82572.1 | |
| J3_9DFE_065 | 1/2a/990:997, 1/2a/1044:1047, 1/2a/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_9DFE_067 | 1/2a/1063:1068, 1/2a/1107:1113, 1/2a/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_9DFE_074 | 1/2a/1073:1074, 1/2a/1083:1086, 1/2a/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_9DFE_069 | 1/2a/1116:1118, 1/2a/1155:1158, 1/2a/1181:1184 | No text annotation | geometric J3_5J7L_010 J3_82365.4 | |
| J3_9DFE_070 | 1/2a/1116:1118, 1/2a/1155:1161, 1/2a/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_9DFE_071 | 1/2a/1237:1241, 1/2a/1296:1303, 1/2a/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J4_9DFE_001 | 1/1A/268:269, 1/1A/370:375, 1/1A/399:406, 1/1A/421:424 | No text annotation J4_45801.6 | ||
| J4_9DFE_002 | 1/1A/297:301, 1/1A/316:319, 1/1A/323:325, 1/1A/337:341 | No text annotation J4_71729.5 | ||
| J4_9DFE_003 | 1/1A/1270:1276, 1/1A/1294:1295, 1/1A/1645:1648, 1/1A/2009:2010 | No text annotation J4_64571.5 | ||
| J4_9DFE_004 | 1/1A/1310:1314, 1/1A/1338:1343, 1/1A/1404:1405, 1/1A/1597:1604 | No text annotation J4_69051.6 | ||
| J4_9DFE_005 | 1/1A/1313:1314, 1/1A/1338:1343, 1/1A/1404:1405, 1/1A/1597:1603 | No text annotation J4_10313.5 | ||
| J4_9DFE_006 | 1/1A/1444:1445, 1/1A/1466:1467, 1/1A/1525:1526, 1/1A/1546:1547 | No text annotation J4_24280.2 | ||
| J4_9DFE_007 | 1/1A/1772:1776, 1/1A/1788:1792, 1/1A/1827:1830, 1/1A/1975:1979 | No text annotation J4_61477.5 | ||
| J4_9DFE_008 | 1/1A/1833:1835, 1/1A/1905:1906, 1/1A/1924:1933, 1/1A/1967:1972 | No text annotation J4_93343.1 | ||
| J4_9DFE_009 | 1/1A/2285:2289, 1/1A/2343:2347, 1/1A/2370:2372, 1/1A/2381:2383 | No text annotation J4_04930.6 | ||
| J4_9DFE_010 | 1/1A/2643:2646, 1/1A/2674:2676, 1/1A/2731:2735, 1/1A/2769:2771 | No text annotation J4_77044.4 | ||
| J4_9DFE_011 | 1/1a/115:122, 1/1a/239:240, 1/1a/286:289, 1/1a/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_9DFE_012 | 1/1a/142:144, 1/1a/178:183, 1/1a/194:198, 1/1a/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_9DFE_013 | 1/1a/575:577, 1/1a/764:769, 1/1a/810:821, 1/1a/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_9DFE_014 | 1/2A/268:269, 1/2A/370:375, 1/2A/399:406, 1/2A/421:424 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_9DFE_015 | 1/2A/297:301, 1/2A/316:319, 1/2A/323:325, 1/2A/337:341 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_9DFE_016 | 1/2A/1270:1276, 1/2A/1294:1295, 1/2A/1645:1648, 1/2A/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_9DFE_017 | 1/2A/1310:1314, 1/2A/1338:1343, 1/2A/1404:1405, 1/2A/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_9DFE_018 | 1/2A/1313:1314, 1/2A/1338:1343, 1/2A/1404:1405, 1/2A/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_9DFE_019 | 1/2A/1444:1445, 1/2A/1466:1467, 1/2A/1525:1526, 1/2A/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_9DFE_020 | 1/2A/1772:1776, 1/2A/1788:1792, 1/2A/1827:1830, 1/2A/1975:1979 | No text annotation | homologous J4_9DFE_007 J4_61477.5 | |
| J4_9DFE_021 | 1/2A/1833:1835, 1/2A/1905:1906, 1/2A/1924:1933, 1/2A/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_9DFE_022 | 1/2A/2285:2289, 1/2A/2343:2347, 1/2A/2370:2372, 1/2A/2381:2383 | No text annotation | homologous J4_9DFE_009 J4_04930.6 | |
| J4_9DFE_023 | 1/2A/2643:2646, 1/2A/2674:2676, 1/2A/2731:2735, 1/2A/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_9DFE_024 | 1/2a/115:122, 1/2a/239:240, 1/2a/286:289, 1/2a/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_9DFE_025 | 1/2a/142:144, 1/2a/178:183, 1/2a/194:198, 1/2a/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_9DFE_026 | 1/2a/575:577, 1/2a/764:769, 1/2a/810:821, 1/2a/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J5_9DFE_001 | 1/1A/47:54, 1/1A/116:121, 1/1A/130:131, 1/1A/148:150, 1/1A/176:178 | No text annotation J5_01737.2 | ||
| J5_9DFE_002 | 1/1A/268:271, 1/1A/271:272, 1/1A/366:375, 1/1A/399:406, 1/1A/421:424 | No text annotation J5_31814.5 | ||
| J5_9DFE_003 | 1/1A/531:533, 1/1A/560:564, 1/1A/577:579, 1/1A/1261:1262, 1/1A/2017:2018 | No text annotation J5_43153.5 | ||
| J5_9DFE_004 | 1/1A/584:589, 1/1A/668:671, 1/1A/809:812, 1/1A/1195:1196, 1/1A/1250:1256 | No text annotation J5_74302.5 | ||
| J5_9DFE_005 | 1/1A/1674:1682, 1/1A/1706:1707, 1/1A/1751:1752, 1/1A/1756:1764, 1/1A/1988:1990 | No text annotation J5_62523.6 | ||
| J5_9DFE_006 | 1/1A/2057:2064, 1/1A/2446:2453, 1/1A/2500:2507, 1/1A/2582:2588, 1/1A/2606:2611 | No text annotation J5_70362.1 | ||
| J5_9DFE_007 | 1/1A/2074:2077, 1/1A/2243:2246, 1/1A/2258:2259, 1/1A/2281:2282, 1/1A/2427:2435 | No text annotation J5_39529.1 | ||
| J5_9DFE_008 | 1/1a/36:39, 1/1a/403:406, 1/1a/436:442, 1/1a/492:500, 1/1a/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_9DFE_009 | 1/1a/58:61, 1/1a/106:113, 1/1a/314:316, 1/1a/337:339, 1/1a/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_9DFE_010 | 1/2A/47:54, 1/2A/116:121, 1/2A/130:131, 1/2A/148:150, 1/2A/176:178 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_9DFE_011 | 1/2A/268:271, 1/2A/271:272, 1/2A/366:375, 1/2A/399:406, 1/2A/421:424 | No text annotation | ||
| J5_9DFE_012 | 1/2A/531:533, 1/2A/560:564, 1/2A/577:579, 1/2A/1261:1262, 1/2A/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_9DFE_013 | 1/2A/584:589, 1/2A/668:671, 1/2A/809:812, 1/2A/1195:1196, 1/2A/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_9DFE_014 | 1/2A/601:604, 1/2A/624:628, 1/2A/635:638, 1/2A/650:652, 1/2A/652:656 | No text annotation | ||
| J5_9DFE_015 | 1/2A/1674:1682, 1/2A/1706:1707, 1/2A/1751:1752, 1/2A/1756:1764, 1/2A/1988:1990 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_9DFE_016 | 1/2A/2057:2064, 1/2A/2446:2453, 1/2A/2500:2507, 1/2A/2582:2588, 1/2A/2606:2611 | No text annotation | ||
| J5_9DFE_017 | 1/2A/2074:2077, 1/2A/2243:2246, 1/2A/2258:2259, 1/2A/2281:2282, 1/2A/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J5_9DFE_018 | 1/2a/36:39, 1/2a/403:406, 1/2a/436:442, 1/2a/492:500, 1/2a/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_9DFE_019 | 1/2a/58:61, 1/2a/106:113, 1/2a/314:316, 1/2a/337:339, 1/2a/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J6_9DFE_001 | 1/1A/44:45, 1/1A/179:183, 1/1A/214:224, 1/1A/231:235, 1/1A/262:266, 1/1A/426:433 | No text annotation J6_45299.4 | ||
| J6_9DFE_002 | 1/1A/2074:2077, 1/1A/2243:2246, 1/1A/2258:2259, 1/1A/2281:2284, 1/1A/2384:2395, 1/1A/2421:2435 | No text annotation J6_64525.1 | ||
| J6_9DFE_003 | 1/2A/44:45, 1/2A/179:183, 1/2A/214:224, 1/2A/231:235, 1/2A/262:266, 1/2A/426:433 | No text annotation | ||
| J6_9DFE_004 | 1/2A/2074:2077, 1/2A/2243:2246, 1/2A/2258:2259, 1/2A/2281:2284, 1/2A/2384:2395, 1/2A/2421:2435 | No text annotation | ||
| J7_9DFE_001 | 1/1A/8:15, 1/1A/525:531, 1/1A/2018:2023, 1/1A/2040:2043, 1/1A/2625:2630, 1/1A/2788:2789, 1/1A/2894:2895 | No text annotation J7_30280.5 | ||
| J7_9DFE_002 | 1/1A/817:822, 1/1A/835:836, 1/1A/943:946, 1/1A/971:976, 1/1A/987:991, 1/1A/1163:1164, 1/1A/1185:1190 | No text annotation J7_21233.5 | ||
| J7_9DFE_003 | 1/2A/817:822, 1/2A/835:836, 1/2A/943:946, 1/2A/971:976, 1/2A/987:991, 1/2A/1163:1164, 1/2A/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9DFE_009 | No text annotation | ||
| J3_9DFE_032 | No text annotation | ||
| J3_9DFE_072 | No text annotation | ||
| J3_9DFE_034 | No text annotation | ||
| J3_9DFE_066 | No text annotation | ||
| J3_9DFE_068 | No text annotation |
Coloring options: