HL_9DFE_021

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAUGCAAAC

Length

10 nucleotides

Bulged bases

9DFE|1|1A|U|747, 9DFE|1|1A|A|751, 9DFE|1|1A|A|752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

9DFE|1|1A|G|744
9DFE|1|1A|G|745
9DFE|1|1A|A|746
9DFE|1|1A|U|747
9DFE|1|1A|G|748
9DFE|1|1A|C|749
9DFE|1|1A|A|750
9DFE|1|1A|A|751
9DFE|1|1A|A|752
9DFE|1|1A|C|753

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 17

50S ribosomal protein L34

Chain 1E

50S ribosomal protein L3

Chain 1W

50S ribosomal protein L22