HL_9DFE_047

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

9DFE|1|1A|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9DFE|1|1A|G|1949
9DFE|1|1A|G|1950
9DFE|1|1A|U|1951
9DFE|1|1A|A|1952
9DFE|1|1A|A|1953
9DFE|1|1A|G|1954
9DFE|1|1A|U|1955
9DFE|1|1A|U|1956
9DFE|1|1A|C|1957

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1O

50S ribosomal protein L14

Chain 1a

Small subunit ribosomal RNA; SSU rRNA