HL_9DFE_049

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

9DFE|1|1A|C|2146

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DFE_049 not in the Motif Atlas

Homologous match to HL_8VTW_050

Geometric discrepancy: 0.253

The information below is about HL_8VTW_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DFE|1|1A|C|2143
9DFE|1|1A|U|2144
9DFE|1|1A|C|2145
9DFE|1|1A|C|2146
9DFE|1|1A|G|2147
9DFE|1|1A|G|2148

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains