HL_9DFE_082

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

9DFE|1|1a|U|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DFE_082 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.117

The information below is about HL_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9DFE|1|1a|G|617
9DFE|1|1a|C|618
9DFE|1|1a|U|619
9DFE|1|1a|C|620
9DFE|1|1a|A|621
9DFE|1|1a|A|622
9DFE|1|1a|C|623

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1d

30S ribosomal protein S4

Chain 1p

30S ribosomal protein S16