HL_9DFE_094

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

9DFE|1|1a|U|1136, 9DFE|1|1a|C|1137, 9DFE|1|1a|G|1139

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DFE_094 not in the Motif Atlas

Homologous match to HL_6CZR_097

Geometric discrepancy: 0.2401

The information below is about HL_6CZR_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DFE|1|1a|G|1134
9DFE|1|1a|U|1135
9DFE|1|1a|U|1136
9DFE|1|1a|C|1137
9DFE|1|1a|G|1138
9DFE|1|1a|G|1139
9DFE|1|1a|C|1140

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1i

30S ribosomal protein S9