3D structure

PDB id
9DFE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CUACGG
Length
6 nucleotides
Bulged bases
9DFE|1|1a|A|1447, 9DFE|1|1a|G|1456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9DFE_099 not in the Motif Atlas
Homologous match to HL_6CZR_102
Geometric discrepancy: 0.1535
The information below is about HL_6CZR_102
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_52463.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
1

Unit IDs

9DFE|1|1a|C|1445
9DFE|1|1a|U|1446
9DFE|1|1a|A|1447
9DFE|1|1a|C|1452
9DFE|1|1a|G|1456
9DFE|1|1a|G|1457

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1t
30S ribosomal protein S20

Coloring options:


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