HL_9DFE_152

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CCUGCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DFE_152 not in the Motif Atlas

Homologous match to HL_9DFE_055

Geometric discrepancy: 0.0546

The information below is about HL_9DFE_055

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9DFE|1|2A|C|2355
9DFE|1|2A|C|2356
9DFE|1|2A|U|2357
9DFE|1|2A|G|2358
9DFE|1|2A|C|2359
9DFE|1|2A|A|2360
9DFE|1|2A|A|2361
9DFE|1|2A|G|2362

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 28

50S ribosomal protein L35

Chain 2P

50S ribosomal protein L15