HL_9DFE_173

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DFE_173 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0955

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9DFE|1|2a|C|320
9DFE|1|2a|A|321
9DFE|1|2a|C|322
9DFE|1|2a|U|323
9DFE|1|2a|G|324
9DFE|1|2a|A|325
9DFE|1|2a|G|326
9DFE|1|2a|A|327
9DFE|1|2a|C|328
9DFE|1|2a|A|329
9DFE|1|2a|C|330
9DFE|1|2a|G|331
9DFE|1|2a|G|332
9DFE|1|2a|G|333

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2t

30S ribosomal protein S20