HL_9DOV_008

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UUUGGGAAUG

Length

10 nucleotides

Bulged bases

9DOV|1|A1|G|283, 9DOV|1|A1|A|284, 9DOV|1|A1|A|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|A1|U|278
9DOV|1|A1|U|279
9DOV|1|A1|U|280
9DOV|1|A1|G|281
9DOV|1|A1|G|282
9DOV|1|A1|G|283
9DOV|1|A1|A|284
9DOV|1|A1|A|285
9DOV|1|A1|U|286
9DOV|1|A1|G|287

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AL

60S ribosomal protein L13-A

Chain AN

60S ribosomal protein L15-A

Chain Aa

60S ribosomal protein L28

Chain Ao

60S ribosomal protein L42-A