9DOV Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9DOV_001 | 1/A1/38:45 | No text annotation | homologous HL_8GLP_001 HL_02262.2 | |
| HL_9DOV_002 | 1/A1/69:74 | No text annotation | homologous HL_9PN5_002 HL_23875.2 | |
| HL_9DOV_003 | 1/A1/90:96 | No text annotation | homologous HL_9AXU_003 HL_76371.5 | |
| HL_9DOV_004 | 1/A1/132:136 | No text annotation | homologous HL_9PN5_004 HL_01957.2 | |
| HL_9DOV_005 | 1/A1/194:201 | No text annotation | homologous HL_9PN5_005 HL_13999.6 | |
| HL_9DOV_006 | 1/A1/208:212 | No text annotation | geometric HL_9AXU_006 HL_75660.11 | |
| HL_9DOV_007 | 1/A1/216:224 | No text annotation | homologous HL_9PN5_007 HL_27670.7 | |
| HL_9DOV_008 | 1/A1/278:287 | No text annotation | homologous HL_9PN5_008 HL_63894.5 | |
| HL_9DOV_009 | 1/A1/303:312 | No text annotation | homologous HL_9PN5_009 HL_00911.5 | |
| HL_9DOV_010 | 1/A1/357:362 | No text annotation | homologous HL_9PN5_010 HL_34789.7 | |
| HL_9DOV_011 | 1/A1/382:387 | No text annotation | homologous HL_9H3G_015 HL_34789.7 | |
| HL_9DOV_013 | 1/A1/599:604 | No text annotation | homologous HL_9PN5_013 HL_34789.7 | |
| HL_9DOV_014 | 1/A1/640:649 | No text annotation | homologous HL_9PN5_014 HL_33597.8 | |
| HL_9DOV_015 | 1/A1/686:694 | No text annotation | homologous HL_9PN5_015 HL_18470.6 | |
| HL_9DOV_016 | 1/A1/707:712 | No text annotation | homologous HL_9PN5_016 HL_34789.7 | |
| HL_9DOV_017 | 1/A1/732:737 | No text annotation | homologous HL_9H3G_023 HL_34789.7 | |
| HL_9DOV_018 | 1/A1/763:768 | No text annotation | geometric HL_8OI5_017 HL_44506.5 | |
| HL_9DOV_019 | 1/A1/844:849 | No text annotation | homologous HL_8GLP_022 HL_34789.7 | |
| HL_9DOV_020 | 1/A1/876:885 | No text annotation | homologous HL_9AXU_018 HL_50204.4 | |
| HL_9DOV_021 | 1/A1/910:918 | No text annotation | homologous HL_9PN5_021 HL_28253.2 | |
| HL_9DOV_022 | 1/A1/958:963 | No text annotation | homologous HL_9H3G_028 HL_27530.4 | |
| HL_9DOV_023 | 1/A1/1076:1083 | No text annotation | homologous HL_9AXU_022 HL_63894.5 | |
| HL_9DOV_024 | 1/A1/1126:1132 | No text annotation | homologous HL_8GLP_028 HL_34789.7 | |
| HL_9DOV_025 | 1/A1/1148:1155 | No text annotation | homologous HL_8GLP_029 HL_47171.4 | |
| HL_9DOV_028 | 1/A1/1347:1357 | No text annotation | homologous HL_9SUM_027 HL_40612.2 | |
| HL_9DOV_029 | 1/A1/1403:1408 | No text annotation | homologous HL_9PN5_029 HL_34789.7 | |
| HL_9DOV_030 | 1/A1/1462:1470 | No text annotation | homologous HL_9PN5_030 HL_33597.8 | |
| HL_9DOV_031 | 1/A1/1506:1512 | No text annotation | homologous HL_9AXU_029 HL_49081.3 | |
| HL_9DOV_032 | 1/A1/1544:1549 | No text annotation | homologous HL_9PN5_032 HL_34789.7 | |
| HL_9DOV_033 | 1/A1/1562:1577 | No text annotation | ||
| HL_9DOV_034 | 1/A1/1599:1608 | No text annotation | homologous HL_9PN5_034 HL_77449.4 | |
| HL_9DOV_035 | 1/A1/1634:1639 | No text annotation | homologous HL_9AXU_033 HL_34789.7 | |
| HL_9DOV_036 | 1/A1/1680:1688 | No text annotation | homologous HL_9PN5_036 HL_22758.4 | |
| HL_9DOV_037 | 1/A1/1719:1725 | No text annotation | homologous HL_9PN5_037 HL_97067.2 | |
| HL_9DOV_038 | 1/A1/1759:1766 | No text annotation | homologous HL_8GLP_043 HL_89167.5 | |
| HL_9DOV_039 | 1/A1/1792:1796 | No text annotation | homologous HL_9AXU_037 HL_90436.6 | |
| HL_9DOV_040 | 1/A1/1844:1851 | No text annotation | homologous HL_9PN5_040 HL_28592.5 | |
| HL_9DOV_041 | 1/A1/1862:1868 | No text annotation | homologous HL_9PN5_041 HL_34789.7 | |
| HL_9DOV_042 | 1/A1/1923:1928 | No text annotation | homologous HL_9AXU_040 HL_61337.7 | |
| HL_9DOV_043 | 1/A1/2110:2114 | No text annotation | homologous HL_9PN5_043 HL_17051.1 | |
| HL_9DOV_044 | 1/A1/2135:2145 | No text annotation | homologous HL_9PN5_044 HL_87681.4 | |
| HL_9DOV_045 | 1/A1/2164:2170 | No text annotation | homologous HL_9PN5_045 HL_34789.7 | |
| HL_9DOV_046 | 1/A1/2219:2226 | tRNA anticodon loop | geometric HL_3RG5_006 HL_87268.5 | |
| HL_9DOV_047 | 1/A1/2253:2263 | No text annotation | homologous HL_9H3G_052 HL_82185.4 | |
| HL_9DOV_048 | 1/A1/2292:2300 | No text annotation | homologous HL_8GLP_054 HL_77449.4 | |
| HL_9DOV_049 | 1/A1/2369:2378 | No text annotation | homologous HL_9PN5_049 HL_78372.4 | |
| HL_9DOV_051 | 1/A1/2535:2544 | No text annotation | ||
| HL_9DOV_052 | 1/A1/2568:2573 | No text annotation | ||
| HL_9DOV_053 | 1/A1/2616:2624 | LSU P loop | homologous HL_8GLP_059 HL_11974.5 | |
| HL_9DOV_054 | 1/A1/2633:2645 | No text annotation | homologous HL_9PN5_053 HL_02042.4 | |
| HL_9DOV_055 | 1/A1/2673:2681 | No text annotation | homologous HL_9H3G_057 HL_02452.4 | |
| HL_9DOV_056 | 1/A1/2693:2700 | No text annotation | homologous HL_9PN5_055 HL_52651.5 | |
| HL_9DOV_057 | 1/A1/2724:2732 | No text annotation | homologous HL_9PN5_056 HL_15296.4 | |
| HL_9DOV_058 | 1/A1/2744:2749 | No text annotation | homologous HL_9H3G_060 HL_34789.7 | |
| HL_9DOV_059 | 1/A1/2776:2784 | No text annotation | homologous HL_9PN5_058 HL_52651.5 | |
| HL_9DOV_060 | 1/A1/2840:2848 | No text annotation | homologous HL_9H3G_062 HL_52011.4 | |
| HL_9DOV_061 | 1/A1/2897:2904 | No text annotation | homologous HL_9PN5_060 HL_02262.2 | |
| HL_9DOV_062 | 1/A1/2920:2926 | No text annotation | homologous HL_9PN5_061 HL_02262.2 | |
| HL_9DOV_063 | 1/A1/2963:2968 | No text annotation | homologous HL_9PN5_062 HL_34789.7 | |
| HL_9DOV_064 | 1/A1/3025:3030 | No text annotation | homologous HL_8GLP_070 HL_34789.7 | |
| HL_9DOV_065 | 1/A1/3068:3073 | No text annotation | homologous HL_9PN5_064 HL_12125.5 | |
| HL_9DOV_066 | 1/A1/3110:3124 | No text annotation | homologous HL_9PN5_065 HL_53269.5 | |
| HL_9DOV_068 | 1/A1/3240:3247 | No text annotation | homologous HL_9PN5_067 HL_31089.4 | |
| HL_9DOV_069 | 1/A1/3303:3311 | No text annotation | homologous HL_9PN5_068 HL_37889.4 | |
| HL_9DOV_070 | 1/A1/3350:3353 | No text annotation | homologous HL_9PN5_069 HL_90436.6 | |
| HL_9DOV_071 | 1/A3/32:45 | No text annotation | geometric HL_8OI5_068 HL_01182.3 | |
| HL_9DOV_072 | 1/A3/36:41 | No text annotation | homologous HL_4V9F_071 HL_59381.5 | |
| HL_9DOV_073 | 1/A3/88:93 | GNRA | homologous HL_4V9F_072 HL_34789.7 | |
| HL_9DOV_074 | 1/A4/47:56 | No text annotation | homologous HL_9PN5_073 HL_17803.4 | |
| HL_9DOV_075 | 1/A4/69:89 | No text annotation | homologous HL_9AXU_072 HL_68571.2 | |
| HL_9DOV_076 | 1/A4/108:114 | No text annotation | homologous HL_9PN5_075 HL_23875.2 | |
| HL_9DOV_077 | 1/A4/124:129 | No text annotation | homologous HL_9PN5_076 HL_18050.2 | |
| HL_9DOV_078 | 1/B5/7:17 | No text annotation | homologous HL_9PN5_077 HL_73535.4 | |
| HL_9DOV_079 | 1/B5/70:81 | No text annotation | ||
| HL_9DOV_080 | 1/B5/154:160 | No text annotation | homologous HL_9PN5_079 HL_34789.7 | |
| HL_9DOV_081 | 1/B5/186:199 | No text annotation | ||
| HL_9DOV_083 | 1/B5/243:250 | No text annotation | homologous HL_9PN5_082 HL_67772.4 | |
| HL_9DOV_085 | 1/B5/330:338 | No text annotation | homologous HL_9H3G_084 HL_87268.5 | |
| HL_9DOV_086 | 1/B5/368:373 | No text annotation | homologous HL_9PN5_085 HL_34789.7 | |
| HL_9DOV_087 | 1/B5/393:404 | No text annotation | homologous HL_9PN5_086 HL_86432.4 | |
| HL_9DOV_088 | 1/B5/414:419 | No text annotation | homologous HL_9H3G_087 HL_61337.7 | |
| HL_9DOV_089 | 1/B5/450:456 | No text annotation | homologous HL_9PN5_088 HL_25795.2 | |
| HL_9DOV_091 | 1/B5/520:532 | No text annotation | homologous HL_9PN5_090 HL_68749.4 | |
| HL_9DOV_092 | 1/B5/569:574 | No text annotation | homologous HL_9PN5_091 HL_34789.7 | |
| HL_9DOV_094 | 1/B5/764:772 | No text annotation | homologous HL_9PN5_092 HL_11974.5 | |
| HL_9DOV_095 | 1/B5/777:783 | No text annotation | homologous HL_9PN5_093 HL_89167.5 | |
| HL_9DOV_097 | 1/B5/900:909 | No text annotation | homologous HL_9H3G_093 HL_38491.5 | |
| HL_9DOV_098 | 1/B5/937:942 | No text annotation | homologous HL_9PN5_096 HL_34789.7 | |
| HL_9DOV_099 | 1/B5/997:1007 | No text annotation | homologous HL_9H3G_095 HL_38491.5 | |
| HL_9DOV_100 | 1/B5/1055:1064 | No text annotation | ||
| HL_9DOV_101 | 1/B5/1084:1089 | No text annotation | homologous HL_9PN5_099 HL_34789.7 | |
| HL_9DOV_102 | 1/B5/1121:1126 | No text annotation | homologous HL_9PN5_100 HL_34789.7 | |
| HL_9DOV_103 | 1/B5/1188:1197 | No text annotation | homologous HL_9PN5_101 HL_97521.4 | |
| HL_9DOV_104 | 1/B5/1238:1247 | No text annotation | homologous HL_9H3G_100 HL_98423.6 | |
| HL_9DOV_105 | 1/B5/1296:1301 | No text annotation | homologous HL_9H3G_101 HL_34789.7 | |
| HL_9DOV_106 | 1/B5/1309:1316 | No text annotation | homologous HL_9PN5_104 HL_63894.5 | |
| HL_9DOV_108 | 1/B5/1396:1402 | No text annotation | geometric HL_9E6Q_009 HL_34789.7 | |
| HL_9DOV_109 | 1/B5/1501:1506 | No text annotation | homologous HL_9PN5_107 HL_34789.7 | |
| HL_9DOV_110 | 1/B5/1550:1561 | No text annotation | homologous HL_9PN5_108 HL_50951.4 | |
| HL_9DOV_111 | 1/B5/1594:1602 | No text annotation | ||
| HL_9DOV_113 | 1/B5/1778:1783 | No text annotation | homologous HL_9H3G_108 HL_34789.7 | |
| HL_9DOV_114 | 1/EC/6838:6845 | No text annotation | ||
| HL_9DOV_115 | 1/EC/6861:6869 | No text annotation | ||
| HL_9DOV_116 | 1/EC/6899:6915 | No text annotation | ||
| HL_9DOV_117 | 1/EC/6924:6929 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9DOV_012 | No text annotation | ||
| HL_9DOV_026 | No text annotation | ||
| HL_9DOV_027 | No text annotation | ||
| HL_9DOV_050 | No text annotation | ||
| HL_9DOV_067 | No text annotation | ||
| HL_9DOV_082 | No text annotation | ||
| HL_9DOV_084 | No text annotation | ||
| HL_9DOV_090 | No text annotation | ||
| HL_9DOV_093 | No text annotation | ||
| HL_9DOV_096 | No text annotation | ||
| HL_9DOV_107 | Mini UNCG | ||
| HL_9DOV_112 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9DOV_001 | 1/A1/7:8, 1/A4/150:152 | Single bulged C | homologous IL_9PN5_001 IL_05642.6 | |
| IL_9DOV_002 | 1/A1/13:15, 1/A4/144:145 | Single bulged U | homologous IL_8GLP_002 IL_97561.8 | |
| IL_9DOV_003 | 1/A1/27:28, 1/A1/56:58 | Single stack bend | homologous IL_9PN5_003 IL_15011.6 | |
| IL_9DOV_004 | 1/A1/31:38, 1/A1/45:53 | tSH-tHW-tHH-tHS | homologous IL_9PN5_004 IL_93502.4 | |
| IL_9DOV_005 | 1/A1/82:89, 1/A1/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_9PN5_005 IL_62879.2 | |
| IL_9DOV_006 | 1/A1/123:124, 1/A1/144:149 | No text annotation | homologous IL_9PN5_006 IL_10396.4 | |
| IL_9DOV_007 | 1/A1/125:127, 1/A1/141:143 | Isolated non-canonical cWW pair | homologous IL_9PN5_007 IL_01003.7 | |
| IL_9DOV_008 | 1/A1/163:165, 1/A1/257:258 | Single stack bend | homologous IL_9PN5_009 IL_15011.6 | |
| IL_9DOV_009 | 1/A1/168:170, 1/A1/247:254 | No text annotation | ||
| IL_9DOV_010 | 1/A1/172:175, 1/A1/244:245 | No text annotation | geometric IL_9H3G_090 IL_18824.4 | |
| IL_9DOV_012 | 1/A1/176:178, 1/A1/238:242 | No text annotation | homologous IL_9H3G_015 IL_70784.2 | |
| IL_9DOV_013 | 1/A1/189:191, 1/A1/204:205 | Single bulged U | homologous IL_9PN5_011 IL_97561.8 | |
| IL_9DOV_014 | 1/A1/337:339, 1/A4/25:26 | Single bulged A | homologous IL_9PN5_012 IL_14190.5 | |
| IL_9DOV_015 | 1/A1/376:379, 1/A1/390:403 | No text annotation | geometric IL_8OI5_015 IL_44923.4 | |
| IL_9DOV_016 | 1/A1/404:410, 1/A4/13:19 | No text annotation | homologous IL_9PN5_014 IL_22311.4 | |
| IL_9DOV_017 | 1/A1/417:419, 1/A4/4:6 | Isolated cWH basepair | geometric IL_9PN5_188 IL_10892.5 | |
| IL_9DOV_018 | 1/A1/429:431, 1/A1/628:630 | No text annotation | homologous IL_9PN5_015 IL_81485.1 | |
| IL_9DOV_019 | 1/A1/512:513, 1/A1/577:579 | Single bulged A | homologous IL_9PN5_017 IL_14190.5 | |
| IL_9DOV_020 | 1/A1/517:525, 1/A1/567:573 | No text annotation | homologous IL_9PN5_018 IL_40132.1 | |
| IL_9DOV_021 | 1/A1/531:539, 1/A1/552:561 | No text annotation | ||
| IL_9DOV_023 | 1/A1/668:670, 1/A1/792:794 | Isolated non-canonical cWW pair | homologous IL_9PN5_020 IL_01003.7 | |
| IL_9DOV_024 | 1/A1/680:684, 1/A1/696:700 | No text annotation | homologous IL_9PN5_021 IL_87030.3 | |
| IL_9DOV_025 | 1/A1/725:728, 1/A1/741:745 | UAA/GAN variation | homologous IL_9PN5_022 IL_45790.4 | |
| IL_9DOV_026 | 1/A1/752:753, 1/A1/779:781 | Single bulged A | homologous IL_9PN5_023 IL_14190.5 | |
| IL_9DOV_027 | 1/A1/755:756, 1/A1/775:777 | Single bulged U | homologous IL_9PN5_024 IL_97561.8 | |
| IL_9DOV_028 | 1/A1/758:763, 1/A1/768:773 | No text annotation | homologous IL_9PN5_025 IL_28265.2 | |
| IL_9DOV_029 | 1/A1/803:805, 1/A1/938:940 | Isolated non-canonical cWW pair | homologous IL_8GLP_289 IL_01003.7 | |
| IL_9DOV_030 | 1/A1/805:809, 1/A1/931:938 | No text annotation | homologous IL_9PN5_027 IL_73855.4 | |
| IL_9DOV_031 | 1/A1/828:829, 1/A1/895:897 | Single bulged A | homologous IL_9PN5_028 IL_14190.5 | |
| IL_9DOV_032 | 1/A1/833:834, 1/A1/859:861 | Single bulged G | homologous IL_9PN5_029 IL_28408.5 | |
| IL_9DOV_033 | 1/A1/834:838, 1/A1/855:859 | No text annotation | homologous IL_9PN5_030 IL_15190.5 | |
| IL_9DOV_034 | 1/A1/869:872, 1/A1/888:890 | No text annotation | homologous IL_9PN5_031 IL_36931.5 | |
| IL_9DOV_035 | 1/A1/873:875, 1/A1/886:887 | Single bulged U | homologous IL_9PN5_032 IL_97561.8 | |
| IL_9DOV_036 | 1/A1/907:909, 1/A1/919:923 | No text annotation | homologous IL_9AXU_032 IL_89509.4 | |
| IL_9DOV_037 | 1/A1/969:970, 1/A1/1111:1113 | Single stack bend | homologous IL_9PN5_034 IL_15011.6 | |
| IL_9DOV_038 | 1/A1/977:982, 1/A1/1101:1104 | No text annotation | homologous IL_9PN5_035 IL_27774.1 | |
| IL_9DOV_039 | 1/A1/983:985, 1/A1/1099:1100 | Single bulged G | homologous IL_9AXU_036 IL_28408.5 | |
| IL_9DOV_040 | 1/A1/991:997, 1/A1/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_9PN5_037 IL_94128.4 | |
| IL_9DOV_041 | 1/A1/997:998, 1/A1/1050:1052 | Minor groove platform | homologous IL_9PN5_038 IL_37129.1 | |
| IL_9DOV_042 | 1/A1/999:1004, 1/A1/1046:1049 | No text annotation | homologous IL_9PN5_039 IL_16301.4 | |
| IL_9DOV_043 | 1/A1/1006:1009, 1/A1/1041:1044 | Tandem non-canonical cWW pairs; U in syn | homologous IL_9PN5_040 IL_71194.5 | |
| IL_9DOV_044 | 1/A1/1009:1011, 1/A1/1039:1041 | Isolated non-canonical cWW pair | homologous IL_9PN5_041 IL_01003.7 | |
| IL_9DOV_045 | 1/A1/1069:1071, 1/A1/1087:1089 | Isolated non-canonical cWW pair | homologous IL_9PN5_042 IL_01003.7 | |
| IL_9DOV_046 | 1/A1/1074:1076, 1/A1/1083:1084 | Single bulged G | homologous IL_9H3G_051 IL_28408.5 | |
| IL_9DOV_047 | 1/A1/1120:1122, 1/A1/1136:1138 | Isolated non-canonical cWW pair | homologous IL_9PN5_044 IL_01003.7 | |
| IL_9DOV_049 | 1/A1/1167:1171, 1/A1/1328:1332 | UAA/GAN | homologous IL_9PN5_046 IL_08938.4 | |
| IL_9DOV_050 | 1/A1/1173:1180, 1/A1/1325:1326 | No text annotation | homologous IL_9PN5_047 IL_46868.2 | |
| IL_9DOV_051 | 1/A1/1180:1182, 1/A1/1324:1325 | Single bulged U | homologous IL_9PN5_048 IL_97561.8 | |
| IL_9DOV_052 | 1/A1/1187:1194, 1/A1/1314:1319 | No text annotation | homologous IL_9PN5_049 IL_39054.4 | |
| IL_9DOV_053 | 1/A1/1194:1205, 1/A1/1299:1314 | No text annotation | homologous IL_9PN5_050 IL_34501.4 | |
| IL_9DOV_054 | 1/A1/1207:1209, 1/A1/1296:1297 | Single bulged U | homologous IL_9PN5_051 IL_97561.8 | |
| IL_9DOV_055 | 1/A1/1218:1226, 1/A1/1283:1287 | Kink-turn | homologous IL_8GLP_082 IL_99692.4 | |
| IL_9DOV_059 | 1/A1/1376:1378, 1/A1/1428:1431 | No text annotation | homologous IL_9PN5_056 IL_84227.2 | |
| IL_9DOV_060 | 1/A1/1385:1387, 1/A1/1420:1421 | Single bulged A | homologous IL_9PN5_057 IL_14190.5 | |
| IL_9DOV_061 | 1/A1/1388:1395, 1/A1/1415:1419 | Kink-turn | homologous IL_9PN5_058 IL_90775.4 | |
| IL_9DOV_062 | 1/A1/1398:1400, 1/A1/1411:1412 | Single bulged A | homologous IL_9PN5_059 IL_14190.5 | |
| IL_9DOV_063 | 1/A1/1444:1450, 1/A1/2354:2359 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8GLP_300 IL_02666.4 | |
| IL_9DOV_064 | 1/A1/1500:1505, 1/A1/1513:1516 | No text annotation | homologous IL_9PN5_061 IL_98911.1 | |
| IL_9DOV_065 | 1/A1/1532:1536, 1/A1/1585:1590 | UAA/GAN | homologous IL_8GLP_091 IL_08938.4 | |
| IL_9DOV_066 | 1/A1/1618:1621, 1/A1/1824:1826 | No text annotation | homologous IL_9PN5_063 IL_77718.1 | |
| IL_9DOV_067 | 1/A1/1623:1624, 1/A1/1820:1822 | Single bulged U | homologous IL_9PN5_064 IL_97561.8 | |
| IL_9DOV_068 | 1/A1/1625:1631, 1/A1/1811:1819 | No text annotation | homologous IL_9PN5_065 NA | |
| IL_9DOV_069 | 1/A1/1645:1649, 1/A1/1806:1810 | No text annotation | homologous IL_9PN5_066 IL_15190.5 | |
| IL_9DOV_070 | 1/A1/1661:1663, 1/A1/1786:1788 | Isolated non-canonical cWW pair | homologous IL_9PN5_067 IL_01003.7 | |
| IL_9DOV_071 | 1/A1/1669:1670, 1/A1/1778:1780 | Single bulged C | homologous IL_9PN5_068 IL_05642.6 | |
| IL_9DOV_072 | 1/A1/1670:1671, 1/A1/1776:1778 | Single stack bend | homologous IL_9PN5_069 IL_15011.6 | |
| IL_9DOV_073 | 1/A1/1702:1707, 1/A1/1737:1743 | No text annotation | homologous IL_9PN5_070 IL_70240.1 | |
| IL_9DOV_074 | 1/A1/1711:1717, 1/A1/1727:1733 | No text annotation | homologous IL_9PN5_071 IL_93476.4 | |
| IL_9DOV_075 | 1/A1/1883:1889, 1/A1/2346:2349 | No text annotation | homologous IL_9PN5_072 IL_89862.4 | |
| IL_9DOV_076 | 1/A1/1895:1897, 1/A1/2338:2340 | No text annotation | homologous IL_9H3G_084 IL_10432.4 | |
| IL_9DOV_077 | 1/A1/1898:1901, 1/A1/2336:2337 | Major groove platform; stack outside cWW | geometric IL_8GLP_304 IL_74641.5 | |
| IL_9DOV_078 | 1/A1/1898:1906, 1/A1/2333:2337 | No text annotation | geometric IL_8GLP_305 IL_80252.4 | |
| IL_9DOV_079 | 1/A1/1901:1906, 1/A1/2333:2336 | No text annotation | homologous IL_8GLP_107 IL_28217.4 | |
| IL_9DOV_080 | 1/A1/1918:1923, 1/A1/1928:1934 | No text annotation | homologous IL_9PN5_077 IL_20700.4 | |
| IL_9DOV_081 | 1/A1/1940:1942, 1/A1/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8GLP_109 IL_01003.7 | |
| IL_9DOV_082 | 1/A1/1947:1948, 1/A1/2098:2101 | No text annotation | homologous IL_9PN5_079 IL_18824.4 | |
| IL_9DOV_083 | 1/A1/2128:2129, 1/A1/2323:2325 | Single bulged A | homologous IL_9PN5_080 IL_14190.5 | |
| IL_9DOV_084 | 1/A1/2156:2161, 1/A1/2173:2180 | No text annotation | homologous IL_9PN5_081 IL_14684.4 | |
| IL_9DOV_085 | 1/A1/2196:2199, 1/A1/2245:2246 | No text annotation | homologous IL_9PN5_082 IL_55206.4 | |
| IL_9DOV_086 | 1/A1/2200:2201, 1/A1/2241:2244 | No text annotation | homologous IL_9PN5_083 IL_71421.6 | |
| IL_9DOV_087 | 1/A1/2204:2210, 1/A1/2235:2238 | No text annotation | homologous IL_9PN5_084 NA | |
| IL_9DOV_088 | 1/A1/2211:2217, 1/A1/2228:2234 | No text annotation | homologous IL_9PN5_085 IL_65359.4 | |
| IL_9DOV_089 | 1/A1/2276:2277, 1/A1/2307:2310 | No text annotation | geometric IL_9AXU_083 IL_24886.5 | |
| IL_9DOV_090 | 1/A1/2277:2288, 1/A1/2304:2307 | No text annotation | homologous IL_9PN5_087 IL_84014.4 | |
| IL_9DOV_091 | 1/A1/2391:2394, 1/A1/2986:2988 | No text annotation | homologous IL_9PN5_088 IL_75527.5 | |
| IL_9DOV_092 | 1/A1/2396:2398, 1/A1/2981:2984 | No text annotation | homologous IL_9PN5_089 IL_80025.4 | |
| IL_9DOV_093 | 1/A1/2409:2411, 1/A1/2811:2812 | Single bulged U | homologous IL_9PN5_090 IL_97561.8 | |
| IL_9DOV_094 | 1/A1/2412:2413, 1/A1/2807:2810 | Minor groove platform | homologous IL_9PN5_091 IL_37129.1 | |
| IL_9DOV_095 | 1/A1/2423:2425, 1/A1/2604:2607 | No text annotation | homologous IL_9PN5_092 IL_87316.5 | |
| IL_9DOV_100 | 1/A1/2520:2526, 1/A1/2584:2587 | No text annotation | homologous IL_9PN5_093 IL_52092.4 | |
| IL_9DOV_101 | 1/A1/2614:2615, 1/A1/2625:2627 | AG tHS outside loop | homologous IL_8GLP_137 IL_14190.5 | |
| IL_9DOV_102 | 1/A1/2666:2668, 1/A1/2686:2690 | No text annotation | homologous IL_9PN5_095 IL_14250.4 | |
| IL_9DOV_103 | 1/A1/2718:2721, 1/A1/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_9AXU_094 IL_15225.5 | |
| IL_9DOV_104 | 1/A1/2770:2773, 1/A1/2787:2788 | No text annotation | homologous IL_9PN5_097 IL_71706.3 | |
| IL_9DOV_105 | 1/A1/2823:2824, 1/A1/2865:2867 | Major groove platform | homologous IL_9H3G_116 IL_48076.11 | |
| IL_9DOV_106 | 1/A1/2824:2826, 1/A1/2863:2865 | Isolated non-canonical cWW pair | homologous IL_9H3G_117 IL_01003.7 | |
| IL_9DOV_107 | 1/A1/2826:2828, 1/A1/2862:2863 | No text annotation | homologous IL_9H3G_118 IL_46637.5 | |
| IL_9DOV_108 | 1/A1/2828:2830, 1/A1/2858:2862 | No text annotation | homologous IL_8GLP_143 IL_36931.5 | |
| IL_9DOV_109 | 1/A1/2835:2839, 1/A1/2849:2853 | No text annotation | homologous IL_9PN5_101 IL_87767.5 | |
| IL_9DOV_110 | 1/A1/2876:2877, 1/A1/2949:2951 | No text annotation | homologous IL_8GLP_146 IL_46637.5 | |
| IL_9DOV_111 | 1/A1/2879:2881, 1/A1/2943:2947 | No text annotation | homologous IL_9PN5_103 IL_30722.2 | |
| IL_9DOV_112 | 1/A1/2881:2882, 1/A1/2940:2943 | No text annotation | homologous IL_8GLP_148 IL_44609.5 | |
| IL_9DOV_113 | 1/A1/2889:2891, 1/A1/2912:2914 | Isolated non-canonical cWW pair | geometric IL_8GLP_149 IL_01003.7 | |
| IL_9DOV_114 | 1/A1/2889:2892, 1/A1/2909:2914 | No text annotation | homologous IL_9PN5_106 NA | |
| IL_9DOV_115 | 1/A1/2891:2892, 1/A1/2909:2912 | No text annotation | homologous IL_9AXU_103 IL_94991.4 | |
| IL_9DOV_116 | 1/A1/2918:2920, 1/A1/2926:2928 | Isolated non-canonical cWW pair | homologous IL_8GLP_152 IL_01003.7 | |
| IL_9DOV_117 | 1/A1/2960:2961, 1/A1/2970:2972 | Single bulged A | homologous IL_8GLP_154 IL_14190.5 | |
| IL_9DOV_118 | 1/A1/3004:3007, 1/A1/3139:3144 | Double sheared | homologous IL_9PN5_110 IL_58355.5 | |
| IL_9DOV_119 | 1/A1/3012:3014, 1/A1/3040:3042 | Isolated non-canonical cWW pair | homologous IL_9AXU_108 IL_71625.6 | |
| IL_9DOV_120 | 1/A1/3016:3018, 1/A1/3036:3038 | Isolated cWH basepair | geometric IL_9PN5_162 IL_10892.5 | |
| IL_9DOV_121 | 1/A1/3018:3025, 1/A1/3030:3036 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_9PN5_112 IL_62879.2 | |
| IL_9DOV_122 | 1/A1/3047:3051, 1/A1/3091:3094 | No text annotation | homologous IL_9PN5_113 IL_06671.4 | |
| IL_9DOV_123 | 1/A1/3054:3059, 1/A1/3084:3088 | No text annotation | homologous IL_9PN5_114 IL_43276.1 | |
| IL_9DOV_124 | 1/A1/3063:3064, 1/A1/3077:3080 | No text annotation | homologous IL_9PN5_115 IL_44609.5 | |
| IL_9DOV_125 | 1/A1/3103:3107, 1/A1/3127:3131 | UAA/GAN | homologous IL_9PN5_116 IL_08938.4 | |
| IL_9DOV_126 | 1/A1/3164:3166, 1/A1/3284:3286 | Isolated non-canonical cWW pair | homologous IL_9PN5_117 IL_01003.7 | |
| IL_9DOV_127 | 1/A1/3168:3170, 1/A1/3280:3282 | Isolated non-canonical cWW pair | homologous IL_9PN5_118 IL_71625.6 | |
| IL_9DOV_128 | 1/A1/3177:3179, 1/A1/3210:3211 | Single bulged A | homologous IL_9PN5_119 IL_14190.5 | |
| IL_9DOV_129 | 1/A1/3179:3188, 1/A1/3204:3210 | No text annotation | homologous IL_9PN5_120 IL_68936.2 | |
| IL_9DOV_130 | 1/A1/3193:3194, 1/A1/3197:3199 | Single bulged U | homologous IL_9PN5_121 IL_97561.8 | |
| IL_9DOV_131 | 1/A1/3225:3229, 1/A1/3258:3260 | No text annotation | homologous IL_9PN5_122 IL_62925.2 | |
| IL_9DOV_132 | 1/A1/3233:3235, 1/A1/3252:3254 | Isolated non-canonical cWW pair | homologous IL_9PN5_123 IL_01003.7 | |
| IL_9DOV_133 | 1/A1/3235:3238, 1/A1/3249:3252 | Tandem non-canonical cWW pairs | homologous IL_9PN5_124 IL_71194.5 | |
| IL_9DOV_134 | 1/A1/3300:3303, 1/A1/3311:3314 | Tandem non-canonical cWW pairs | homologous IL_9PN5_125 IL_71194.5 | |
| IL_9DOV_135 | 1/A1/3318:3320, 1/A1/3387:3388 | Single bulged U | homologous IL_9PN5_126 IL_97561.8 | |
| IL_9DOV_136 | 1/A1/3324:3325, 1/A1/3381:3383 | Single bulged U | homologous IL_9PN5_127 IL_97561.8 | |
| IL_9DOV_137 | 1/A1/3328:3330, 1/A1/3373:3378 | No text annotation | homologous IL_9PN5_128 IL_00086.4 | |
| IL_9DOV_138 | 1/A1/3332:3337, 1/A1/3367:3371 | No text annotation | homologous IL_9PN5_129 IL_48489.4 | |
| IL_9DOV_139 | 1/A1/3340:3342, 1/A1/3363:3364 | Single bulged C | homologous IL_9H3G_145 IL_05642.6 | |
| IL_9DOV_140 | 1/A1/3342:3345, 1/A1/3360:3363 | Double sheared; A in syn | homologous IL_9AXU_123 IL_58355.5 | |
| IL_9DOV_141 | 1/A1/3349:3350, 1/A1/3353:3356 | No text annotation | homologous IL_9PN5_132 IL_09092.2 | |
| IL_9DOV_142 | 1/A3/15:16, 1/A3/63:65 | Single bulged A | geometric IL_8OI5_134 IL_14190.5 | |
| IL_9DOV_143 | 1/A3/21:27, 1/A3/53:58 | No text annotation | geometric IL_8QYX_166 IL_41504.3 | |
| IL_9DOV_144 | 1/A3/28:29, 1/A3/49:52 | No text annotation | geometric IL_8OI5_136 IL_87975.2 | |
| IL_9DOV_145 | 1/A3/29:30, 1/A3/47:49 | Single stack bend | geometric IL_8OI5_137 IL_15011.6 | |
| IL_9DOV_146 | 1/A3/32:36, 1/A3/41:45 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.15 | |
| IL_9DOV_147 | 1/A3/72:80, 1/A3/100:106 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_8P9A_369 NA | |
| IL_9DOV_148 | 1/A3/84:87, 1/A3/94:96 | Isolated non-canonical cWW pair | geometric IL_8OI5_140 IL_01003.7 | |
| IL_9DOV_149 | 1/A4/64:66, 1/A4/93:96 | No text annotation | homologous IL_9PN5_140 IL_30722.2 | |
| IL_9DOV_150 | 1/A4/68:69, 1/A4/89:91 | Single bulged U | homologous IL_9PN5_141 IL_97561.8 | |
| IL_9DOV_151 | 1/B5/24:26, 1/B5/600:601 | Single bulged C | homologous IL_9H3G_155 IL_05642.6 | |
| IL_9DOV_152 | 1/B5/35:37, 1/B5/471:473 | Isolated non-canonical cWW pair | homologous IL_9PN5_143 IL_01003.7 | |
| IL_9DOV_153 | 1/B5/37:41, 1/B5/466:471 | No text annotation | homologous IL_9PN5_144 IL_35092.2 | |
| IL_9DOV_154 | 1/B5/42:48, 1/B5/431:433 | No text annotation | homologous IL_9PN5_145 IL_88082.5 | |
| IL_9DOV_155 | 1/B5/50:52, 1/B5/428:429 | Minor groove platform | homologous IL_9PN5_146 IL_26092.1 | |
| IL_9DOV_156 | 1/B5/58:63, 1/B5/87:89 | No text annotation | homologous IL_9PN5_147 IL_61299.9 | |
| IL_9DOV_157 | 1/B5/64:69, 1/B5/82:86 | No text annotation | homologous IL_9PN5_148 IL_21667.4 | |
| IL_9DOV_158 | 1/B5/109:112, 1/B5/302:305 | Tandem non-canonical cWW pairs | homologous IL_9PN5_149 IL_71194.5 | |
| IL_9DOV_159 | 1/B5/113:116, 1/B5/300:301 | No text annotation | homologous IL_9PN5_150 IL_71421.6 | |
| IL_9DOV_160 | 1/B5/117:122, 1/B5/295:299 | No text annotation | homologous IL_9PN5_151 IL_31545.4 | |
| IL_9DOV_161 | 1/B5/143:149, 1/B5/165:172 | No text annotation | homologous IL_9H3G_165 IL_24485.3 | |
| IL_9DOV_162 | 1/B5/150:152, 1/B5/162:164 | Isolated cWH basepair | homologous IL_9PN5_153 IL_10892.5 | |
| IL_9DOV_163 | 1/B5/204:206, 1/B5/259:263 | No text annotation | homologous IL_9PN5_154 IL_36931.5 | |
| IL_9DOV_164 | 1/B5/206:208, 1/B5/257:259 | Isolated non-canonical cWW pair | homologous IL_9PN5_155 IL_71625.6 | |
| IL_9DOV_165 | 1/B5/265:267, 1/B5/288:289 | Single bulged A | homologous IL_9H3G_171 IL_14190.5 | |
| IL_9DOV_166 | 1/B5/270:273, 1/B5/283:285 | No text annotation | homologous IL_9H3G_172 IL_77718.1 | |
| IL_9DOV_168 | 1/B5/311:316, 1/B5/348:355 | Kink-turn with non-sequential stacking | homologous IL_9PN5_159 IL_46174.7 | |
| IL_9DOV_169 | 1/B5/318:323, 1/B5/345:346 | No text annotation | homologous IL_9H3G_174 IL_01372.4 | |
| IL_9DOV_170 | 1/B5/363:365, 1/B5/376:381 | No text annotation | homologous IL_9PN5_161 IL_93336.4 | |
| IL_9DOV_171 | 1/B5/389:391, 1/B5/406:408 | Isolated cWH basepair | homologous IL_9PN5_162 IL_10892.5 | |
| IL_9DOV_172 | 1/B5/411:413, 1/B5/420:422 | Isolated non-canonical cWW pair | homologous IL_9PN5_163 IL_19025.1 | |
| IL_9DOV_173 | 1/B5/439:441, 1/B5/463:464 | Single bulged U | homologous IL_9PN5_164 IL_97561.8 | |
| IL_9DOV_174 | 1/B5/443:447, 1/B5/460:461 | No text annotation | homologous IL_9PN5_165 IL_26900.4 | |
| IL_9DOV_175 | 1/B5/447:448, 1/B5/458:460 | Single bulged G | homologous IL_9PN5_166 IL_28408.5 | |
| IL_9DOV_179 | 1/B5/517:518, 1/B5/533:535 | Minor groove platform | homologous IL_9H3G_183 IL_26092.1 | |
| IL_9DOV_180 | 1/B5/518:520, 1/B5/532:533 | Minor groove platform | homologous IL_9PN5_170 IL_26092.1 | |
| IL_9DOV_181 | 1/B5/550:557, 1/B5/587:588 | No text annotation | homologous IL_9PN5_171 IL_11411.4 | |
| IL_9DOV_182 | 1/B5/557:559, 1/B5/586:587 | Single bulged U | homologous IL_9PN5_172 IL_97561.8 | |
| IL_9DOV_183 | 1/B5/562:568, 1/B5/575:583 | Kink-turn related | homologous IL_9PN5_173 IL_52042.4 | |
| IL_9DOV_184 | 1/B5/616:622, 1/B5/1104:1105 | No text annotation | homologous IL_9PN5_174 IL_20847.4 | |
| IL_9DOV_185 | 1/B5/624:626, 1/B5/973:975 | Isolated non-canonical cWW pair | homologous IL_9PN5_175 IL_01003.7 | |
| IL_9DOV_186 | 1/B5/627:631, 1/B5/968:972 | No text annotation | homologous IL_9PN5_176 IL_05821.4 | |
| IL_9DOV_187 | 1/B5/646:648, 1/B5/686:688 | Isolated non-canonical cWW pair | homologous IL_9PN5_177 IL_19025.1 | |
| IL_9DOV_188 | 1/B5/746:747, 1/B5/802:805 | No text annotation | homologous IL_9PN5_178 IL_73108.5 | |
| IL_9DOV_189 | 1/B5/748:750, 1/B5/799:801 | Isolated non-canonical cWW pair | homologous IL_9PN5_179 IL_71625.6 | |
| IL_9DOV_190 | 1/B5/751:759, 1/B5/791:798 | No text annotation | homologous IL_9PN5_180 IL_59049.5 | |
| IL_9DOV_192 | 1/B5/865:866, 1/B5/962:965 | Major groove platform; stack outside cWW | geometric IL_8GLP_235 IL_74641.5 | |
| IL_9DOV_193 | 1/B5/868:870, 1/B5/957:960 | Isolated non-canonical cWW pair | homologous IL_9PN5_183 IL_01003.7 | |
| IL_9DOV_194 | 1/B5/871:873, 1/B5/954:956 | Isolated non-canonical cWW pair | geometric IL_7QUA_003 IL_01003.7 | |
| IL_9DOV_195 | 1/B5/874:878, 1/B5/950:953 | Tandem non-canonical cWW pairs | homologous IL_9PN5_185 IL_15225.5 | |
| IL_9DOV_196 | 1/B5/885:888, 1/B5/924:927 | Tandem non-canonical cWW pairs | homologous IL_9PN5_186 IL_15225.5 | |
| IL_9DOV_197 | 1/B5/893:899, 1/B5/910:919 | No text annotation | homologous IL_9PN5_187 NA | |
| IL_9DOV_198 | 1/B5/985:990, 1/B5/1014:1016 | No text annotation | homologous IL_9PN5_189 IL_31690.2 | |
| IL_9DOV_199 | 1/B5/990:994, 1/B5/1010:1014 | tSH-tWH-tHS | geometric IL_4WF9_052 IL_05821.4 | |
| IL_9DOV_200 | 1/B5/1034:1036, 1/B5/1095:1101 | No text annotation | homologous IL_9H3G_205 IL_82706.5 | |
| IL_9DOV_201 | 1/B5/1041:1044, 1/B5/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_9PN5_192 IL_15225.5 | |
| IL_9DOV_202 | 1/B5/1051:1053, 1/B5/1066:1067 | Single bulged U | homologous IL_9PN5_193 IL_97561.8 | |
| IL_9DOV_203 | 1/B5/1111:1118, 1/B5/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_9PN5_194 IL_84044.4 | |
| IL_9DOV_204 | 1/B5/1146:1147, 1/B5/1630:1632 | Single bulged A | homologous IL_9PN5_195 IL_14190.5 | |
| IL_9DOV_205 | 1/B5/1149:1151, 1/B5/1627:1628 | Single bulged G | homologous IL_9PN5_196 IL_28408.5 | |
| IL_9DOV_206 | 1/B5/1157:1160, 1/B5/1617:1621 | No text annotation | homologous IL_9PN5_197 IL_63596.15 | |
| IL_9DOV_207 | 1/B5/1173:1175, 1/B5/1464:1466 | Isolated non-canonical cWW pair | homologous IL_9PN5_198 IL_01003.7 | |
| IL_9DOV_208 | 1/B5/1178:1179, 1/B5/1459:1461 | Minor groove platform | homologous IL_9H3G_214 IL_37129.1 | |
| IL_9DOV_209 | 1/B5/1213:1215, 1/B5/1448:1450 | Isolated non-canonical cWW pair | homologous IL_9H3G_215 IL_01003.7 | |
| IL_9DOV_210 | 1/B5/1224:1233, 1/B5/1252:1259 | No text annotation | ||
| IL_9DOV_211 | 1/B5/1234:1236, 1/B5/1249:1251 | No text annotation | homologous IL_9H3G_217 IL_75737.2 | |
| IL_9DOV_212 | 1/B5/1268:1270, 1/B5/1440:1441 | Single bulged U | homologous IL_9H3G_218 IL_97561.8 | |
| IL_9DOV_213 | 1/B5/1272:1276, 1/B5/1436:1438 | No text annotation | geometric IL_8GLP_259 IL_82453.4 | |
| IL_9DOV_214 | 1/B5/1272:1278, 1/B5/1430:1438 | No text annotation | homologous IL_9SUM_203 NA | |
| IL_9DOV_215 | 1/B5/1276:1278, 1/B5/1430:1436 | No text annotation | homologous IL_9H3G_221 IL_09439.2 | |
| IL_9DOV_216 | 1/B5/1280:1281, 1/B5/1426:1428 | Single bulged A | homologous IL_9H3G_222 IL_14190.5 | |
| IL_9DOV_217 | 1/B5/1290:1292, 1/B5/1323:1325 | Isolated cWH basepair | homologous IL_9H3G_223 IL_10892.5 | |
| IL_9DOV_218 | 1/B5/1306:1308, 1/B5/1317:1318 | Minor groove platform | geometric IL_8CRE_457 IL_37129.1 | |
| IL_9DOV_219 | 1/B5/1339:1342, 1/B5/1383:1385 | No text annotation | homologous IL_9PN5_212 IL_01003.7 | |
| IL_9DOV_220 | 1/B5/1344:1348, 1/B5/1377:1381 | No text annotation | ||
| IL_9DOV_221 | 1/B5/1352:1354, 1/B5/1369:1373 | No text annotation | ||
| IL_9DOV_222 | 1/B5/1389:1391, 1/B5/1407:1412 | No text annotation | geometric IL_8CRE_461 IL_97340.2 | |
| IL_9DOV_223 | 1/B5/1480:1487, 1/B5/1519:1527 | No text annotation | homologous IL_9PN5_216 IL_74283.2 | |
| IL_9DOV_224 | 1/B5/1488:1494, 1/B5/1513:1518 | No text annotation | homologous IL_9PN5_217 IL_12629.2 | |
| IL_9DOV_225 | 1/B5/1495:1498, 1/B5/1509:1512 | No text annotation | homologous IL_9PN5_218 IL_39691.1 | |
| IL_9DOV_226 | 1/B5/1540:1545, 1/B5/1566:1571 | No text annotation | homologous IL_9PN5_219 IL_28265.2 | |
| IL_9DOV_227 | 1/B5/1636:1638, 1/B5/1764:1767 | No text annotation | homologous IL_9PN5_220 IL_18228.4 | |
| IL_9DOV_228 | 1/B5/1638:1641, 1/B5/1760:1764 | No text annotation | homologous IL_9PN5_221 IL_25873.5 | |
| IL_9DOV_229 | 1/B5/1642:1644, 1/B5/1757:1759 | Isolated non-canonical cWW pair | homologous IL_9PN5_222 IL_01003.7 | |
| IL_9DOV_230 | 1/B5/1644:1647, 1/B5/1753:1757 | No text annotation | geometric IL_8CRE_469 IL_26271.1 | |
| IL_9DOV_231 | 1/B5/1650:1652, 1/B5/1748:1750 | Isolated non-canonical cWW pair | homologous IL_9PN5_224 IL_01003.7 | |
| IL_9DOV_232 | 1/B5/1653:1656, 1/B5/1744:1747 | Double sheared | homologous IL_9PN5_225 IL_58355.5 | |
| IL_9DOV_233 | 1/B5/1656:1658, 1/B5/1743:1744 | Single bulged U | homologous IL_9PN5_226 IL_97561.8 | |
| IL_9DOV_234 | 1/B5/1665:1667, 1/B5/1734:1736 | No text annotation | homologous IL_9PN5_227 IL_55553.3 | |
| IL_9DOV_235 | 1/B5/1669:1672, 1/B5/1729:1732 | Double sheared | homologous IL_9H3G_241 IL_58355.5 | |
| IL_9DOV_236 | 1/B5/1672:1674, 1/B5/1727:1729 | Isolated non-canonical cWW pair | homologous IL_9PN5_229 IL_01003.7 | |
| IL_9DOV_237 | 1/B5/1675:1678, 1/B5/1723:1726 | Tandem non-canonical cWW pairs | homologous IL_9PN5_230 IL_71194.5 | |
| IL_9DOV_238 | 1/B5/1678:1682, 1/B5/1719:1723 | Triple sheared | geometric IL_8CRE_476 IL_15190.5 | |
| IL_9DOV_239 | 1/B5/1684:1687, 1/B5/1715:1717 | No text annotation | ||
| IL_9DOV_243 | 1/EC/6834:6837, 1/EC/6846:6855 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9DOV_011 | No text annotation | ||
| IL_9DOV_022 | Single stack bend | ||
| IL_9DOV_048 | No text annotation | ||
| IL_9DOV_056 | Single stack bend | ||
| IL_9DOV_057 | No text annotation | ||
| IL_9DOV_058 | No text annotation | ||
| IL_9DOV_096 | No text annotation | ||
| IL_9DOV_097 | No text annotation | ||
| IL_9DOV_098 | No text annotation | ||
| IL_9DOV_099 | No text annotation | ||
| IL_9DOV_167 | Single bulged U | ||
| IL_9DOV_176 | No text annotation | ||
| IL_9DOV_177 | No text annotation | ||
| IL_9DOV_178 | No text annotation | ||
| IL_9DOV_191 | No text annotation | ||
| IL_9DOV_240 | No text annotation | ||
| IL_9DOV_241 | Isolated cWH basepair | ||
| IL_9DOV_242 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9DOV_001 | 1/A1/113:123, 1/A1/149:158, 1/A1/263:267 | No text annotation | homologous J3_9PN5_001 J3_69230.4 | |
| J3_9DOV_002 | 1/A1/113:124, 1/A1/144:158, 1/A1/263:267 | No text annotation | ||
| J3_9DOV_003 | 1/A1/185:189, 1/A1/205:214, 1/A1/226:231 | No text annotation | homologous J3_9PN5_003 J3_76204.1 | |
| J3_9DOV_004 | 1/A1/340:356, 1/A1/363:368, 1/A4/21:24 | No text annotation | homologous J3_9PN5_004 J3_07616.4 | |
| J3_9DOV_005 | 1/A1/369:376, 1/A1/403:404, 1/A4/19:20 | No text annotation | geometric J3_9PN5_005 J3_68715.4 | |
| J3_9DOV_006 | 1/A1/369:379, 1/A1/390:404, 1/A4/19:20 | No text annotation | homologous J3_9PN5_006 J3_17917.4 | |
| J3_9DOV_007 | 1/A1/502:503, 1/A1/588:597, 1/A1/606:611 | No text annotation | homologous J3_9PN5_007 J3_86133.3 | |
| J3_9DOV_008 | 1/A1/814:820, 1/A1/905:907, 1/A1/923:926 | No text annotation | homologous J3_9AXU_009 J3_46658.4 | |
| J3_9DOV_009 | 1/A1/829:831, 1/A1/863:867, 1/A1/892:895 | No text annotation | homologous J3_9PN5_009 J3_69816.4 | |
| J3_9DOV_010 | 1/A1/986:987, 1/A1/1062:1066, 1/A1/1092:1098 | No text annotation | homologous J3_9PN5_010 J3_22278.2 | |
| J3_9DOV_012 | 1/A1/1479:1485, 1/A1/1857:1859, 1/A1/1871:1874 | No text annotation | homologous J3_9PN5_012 J3_05025.4 | |
| J3_9DOV_013 | 1/A1/1488:1491, 1/A1/1837:1843, 1/A1/1852:1854 | No text annotation | homologous J3_9PN5_013 J3_76012.4 | |
| J3_9DOV_014 | 1/A1/1526:1531, 1/A1/1591:1595, 1/A1/1612:1613 | No text annotation | homologous J3_9PN5_014 J3_94309.4 | |
| J3_9DOV_015 | 1/A1/1537:1542, 1/A1/1551:1561, 1/A1/1578:1584 | No text annotation | homologous J3_9PN5_015 J3_53783.2 | |
| J3_9DOV_016 | 1/A1/1631:1632, 1/A1/1641:1645, 1/A1/1810:1811 | No text annotation | homologous J3_9PN5_016 J3_05348.4 | |
| J3_9DOV_017 | 1/A1/1654:1658, 1/A1/1791:1792, 1/A1/1796:1801 | No text annotation | homologous J3_9PN5_017 J3_08594.4 | |
| J3_9DOV_018 | 1/A1/2432:2435, 1/A1/2512:2517, 1/A1/2590:2597 | No text annotation | homologous J3_9PN5_018 J3_63968.2 | |
| J3_9DOV_019 | 1/A1/2529:2532, 1/A1/2547:2563, 1/A1/2578:2581 | No text annotation | homologous J3_9PN5_019 J3_60469.1 | |
| J3_9DOV_020 | 1/A1/2651:2653, 1/A1/2754:2765, 1/A1/2793:2798 | No text annotation | homologous J3_9PN5_020 J3_04772.4 | |
| J3_9DOV_021 | 1/A1/2664:2666, 1/A1/2690:2692, 1/A1/2701:2706 | No text annotation | homologous J3_9PN5_021 J3_05327.4 | |
| J3_9DOV_022 | 1/A1/2886:2889, 1/A1/2914:2916, 1/A1/2930:2936 | No text annotation | homologous J3_9PN5_022 J3_44047.4 | |
| J3_9DOV_023 | 1/A1/3171:3176, 1/A1/3212:3220, 1/A1/3265:3279 | No text annotation | ||
| J3_9DOV_024 | 1/A1/3298:3300, 1/A1/3314:3318, 1/A1/3388:3390 | No text annotation | homologous J3_9PN5_024 NA | |
| J3_9DOV_025 | 1/A3/9:14, 1/A3/66:67, 1/A3/111:112 | No text annotation | geometric J3_8QYX_024 J3_26985.4 | |
| J3_9DOV_026 | 1/A4/44:45, 1/A4/58:64, 1/A4/96:100 | No text annotation | homologous J3_9PN5_026 J3_01004.4 | |
| J3_9DOV_027 | 1/B5/41:42, 1/B5/433:439, 1/B5/464:466 | No text annotation | homologous J3_9PN5_027 J3_58657.4 | |
| J3_9DOV_028 | 1/B5/213:228, 1/B5/237:243, 1/B5/250:252 | No text annotation | ||
| J3_9DOV_029 | 1/B5/633:635, 1/B5/861:865, 1/B5/965:966 | No text annotation | geometric J3_9PN5_030 J3_01633.3 | |
| J3_9DOV_030 | 1/B5/633:635, 1/B5/861:866, 1/B5/962:966 | No text annotation | homologous J3_9PN5_031 J3_17385.8 | |
| J3_9DOV_031 | 1/B5/760:763, 1/B5/773:775, 1/B5/785:790 | No text annotation | homologous J3_9PN5_032 J3_97642.5 | |
| J3_9DOV_032 | 1/B5/881:884, 1/B5/928:936, 1/B5/943:947 | No text annotation | homologous J3_9PN5_033 NA | |
| J3_9DOV_033 | 1/B5/1037:1039, 1/B5/1079:1083, 1/B5/1090:1094 | No text annotation | geometric J3_8CRE_077 J3_41498.1 | |
| J3_9DOV_034 | 1/B5/1161:1164, 1/B5/1581:1587, 1/B5/1609:1616 | No text annotation | homologous J3_9PN5_035 J3_85722.4 | |
| J3_9DOV_035 | 1/B5/1168:1171, 1/B5/1468:1470, 1/B5/1574:1577 | No text annotation | homologous J3_9PN5_036 J3_44359.4 | |
| J3_9DOV_036 | 1/B5/1180:1187, 1/B5/1198:1209, 1/B5/1454:1458 | No text annotation | homologous J3_9PN5_037 J3_88451.4 | |
| J3_9DOV_037 | 1/B5/1215:1220, 1/B5/1263:1267, 1/B5/1442:1448 | No text annotation | homologous J3_9H3G_038 J3_87797.4 | |
| J3_9DOV_038 | 1/B5/1283:1288, 1/B5/1327:1332, 1/B5/1419:1424 | No text annotation | homologous J3_9PN5_039 NA | |
| J3_9DOV_039 | 1/B5/1293:1294, 1/B5/1303:1306, 1/B5/1318:1322 | No text annotation | homologous J3_9PN5_040 J3_76043.7 | |
| J3_9DOV_040 | 1/B5/1336:1338, 1/B5/1386:1389, 1/B5/1412:1415 | No text annotation | geometric J3_8CRE_084 J3_82365.8 | |
| J3_9DOV_041 | 1/B5/1336:1338, 1/B5/1386:1391, 1/B5/1407:1415 | No text annotation | homologous J3_9PN5_042 J3_69856.2 | |
| J3_9DOV_042 | 1/B5/1470:1474, 1/B5/1533:1540, 1/B5/1571:1574 | No text annotation | homologous J3_9PN5_043 J3_03192.4 | |
| J4_9DOV_001 | 1/A1/112:113, 1/A1/267:272, 1/A1/293:299, 1/A1/316:319 | No text annotation | homologous J4_9PN5_001 J4_94698.4 | |
| J4_9DOV_002 | 1/A1/185:189, 1/A1/205:208, 1/A1/212:214, 1/A1/226:231 | No text annotation | homologous J4_9PN5_002 J4_05458.1 | |
| J4_9DOV_003 | 1/A1/1451:1457, 1/A1/1475:1476, 1/A1/1877:1880, 1/A1/2352:2353 | No text annotation | homologous J4_9PN5_003 J4_19484.2 | |
| J4_9DOV_004 | 1/A1/1492:1496, 1/A1/1520:1525, 1/A1/1614:1615, 1/A1/1829:1836 | No text annotation | homologous J4_9PN5_004 J4_17758.2 | |
| J4_9DOV_005 | 1/A1/1674:1675, 1/A1/1693:1698, 1/A1/1747:1753, 1/A1/1772:1773 | No text annotation | homologous J4_9PN5_005 NA | |
| J4_9DOV_006 | 1/A1/2130:2134, 1/A1/2146:2150, 1/A1/2186:2190, 1/A1/2317:2322 | No text annotation | homologous J4_9PN5_006 J4_78485.4 | |
| J4_9DOV_007 | 1/A1/2192:2194, 1/A1/2248:2249, 1/A1/2267:2276, 1/A1/2310:2315 | No text annotation | homologous J4_8GLP_010 J4_21738.2 | |
| J4_9DOV_008 | 1/A1/2654:2658, 1/A1/2712:2716, 1/A1/2740:2742, 1/A1/2751:2753 | No text annotation | homologous J4_9PN5_008 J4_59590.4 | |
| J4_9DOV_009 | 1/A1/3010:3012, 1/A1/3042:3043, 1/A1/3098:3100, 1/A1/3134:3136 | No text annotation | homologous J4_9PN5_009 J4_37757.4 | |
| J4_9DOV_010 | 1/B5/99:107, 1/B5/307:309, 1/B5/357:361, 1/B5/383:384 | No text annotation | homologous J4_9PN5_010 J4_15241.5 | |
| J4_9DOV_011 | 1/B5/622:624, 1/B5/975:980, 1/B5/1021:1032, 1/B5/1103:1104 | No text annotation | homologous J4_9PN5_011 J4_14595.4 | |
| J5_9DOV_001 | 1/A1/20:22, 1/A4/35:42, 1/A4/102:107, 1/A4/115:116, 1/A4/137:139 | No text annotation | homologous J5_9PN5_001 J5_27223.4 | |
| J5_9DOV_002 | 1/A1/658:663, 1/A1/799:802, 1/A1/941:944, 1/A1/1375:1376, 1/A1/1431:1437 | No text annotation | homologous J5_9PN5_002 J5_08384.4 | |
| J5_9DOV_003 | 1/A1/675:678, 1/A1/702:706, 1/A1/713:721, 1/A1/749:751, 1/A1/782:787 | No text annotation | homologous J5_9PN5_003 J5_56629.2 | |
| J5_9DOV_004 | 1/A1/1906:1914, 1/A1/1938:1939, 1/A1/2109:2110, 1/A1/2114:2122, 1/A1/2331:2333 | No text annotation | homologous J5_9PN5_004 J5_99177.4 | |
| J5_9DOV_005 | 1/A1/2399:2406, 1/A1/2815:2823, 1/A1/2867:2876, 1/A1/2951:2957, 1/A1/2975:2980 | No text annotation | ||
| J5_9DOV_006 | 1/A1/2416:2419, 1/A1/2611:2614, 1/A1/2627:2628, 1/A1/2650:2651, 1/A1/2798:2804 | No text annotation | homologous J5_9AXU_007 J5_96125.4 | |
| J5_9DOV_007 | 1/B5/31:35, 1/B5/473:479, 1/B5/509:516, 1/B5/536:546, 1/B5/592:595 | No text annotation | ||
| J5_9DOV_008 | 1/B5/54:57, 1/B5/90:97, 1/B5/386:388, 1/B5/409:411, 1/B5/422:426 | No text annotation | homologous J5_9PN5_009 J5_58574.4 | |
| J5_9DOV_009 | 1/B5/124:143, 1/B5/172:182, 1/B5/203:204, 1/B5/263:265, 1/B5/289:293 | No text annotation | ||
| J5_9DOV_010 | 1/B5/124:143, 1/B5/172:182, 1/B5/203:204, 1/B5/263:267, 1/B5/288:293 | No text annotation | ||
| J5_9DOV_011 | 1/B5/636:641, 1/B5/693:700, 1/B5/738:744, 1/B5/807:822, 1/B5/850:860 | No text annotation | ||
| J6_9DOV_001 | 1/A1/22:27, 1/A1/58:68, 1/A1/75:79, 1/A1/106:110, 1/A1/321:331, 1/A4/32:35 | No text annotation | ||
| J6_9DOV_002 | 1/A1/2416:2419, 1/A1/2611:2614, 1/A1/2627:2628, 1/A1/2650:2653, 1/A1/2754:2765, 1/A1/2793:2804 | No text annotation | ||
| J7_9DOV_001 | 1/A1/949:956, 1/A1/965:968, 1/A1/1114:1117, 1/A1/1141:1146, 1/A1/1157:1161, 1/A1/1338:1339, 1/A1/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9DOV_011 | No text annotation | ||
| J3_9DOV_043 | No text annotation |
Coloring options: