HL_9DOV_012

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UGCCUCGGUAA

Length

11 nucleotides

Bulged bases

9DOV|1|A1|G|542, 9DOV|1|A1|C|543, 9DOV|1|A1|C|544, 9DOV|1|A1|U|545, 9DOV|1|A1|C|546, 9DOV|1|A1|G|547, 9DOV|1|A1|G|548

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|A1|U|541
9DOV|1|A1|G|542
9DOV|1|A1|C|543
9DOV|1|A1|C|544
9DOV|1|A1|U|545
9DOV|1|A1|C|546
9DOV|1|A1|G|547
9DOV|1|A1|G|548
9DOV|1|A1|U|549
9DOV|1|A1|A|550
9DOV|1|A1|A|551

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AH

60S ribosomal protein L9-A