HL_9DOV_024

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

9DOV|1|A1|G|1131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DOV_024 not in the Motif Atlas

Homologous match to HL_8GLP_028

Geometric discrepancy: 0.0664

The information below is about HL_8GLP_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9DOV|1|A1|G|1126
9DOV|1|A1|G|1127
9DOV|1|A1|U|1128
9DOV|1|A1|A|1129
9DOV|1|A1|A|1130
9DOV|1|A1|G|1131
9DOV|1|A1|C|1132

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AI

Large ribosomal subunit protein uL16