HL_9DOV_025

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DOV_025 not in the Motif Atlas

Homologous match to HL_8GLP_029

Geometric discrepancy: 0.0736

The information below is about HL_8GLP_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9DOV|1|A1|G|1148
9DOV|1|A1|G|1149
9DOV|1|A1|A|1150
9DOV|1|A1|U|1151
9DOV|1|A1|G|1152
9DOV|1|A1|A|1153
9DOV|1|A1|A|1154
9DOV|1|A1|C|1155

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A3

5S ribosomal RNA; 5S rRNA

Chain AF

60S ribosomal protein L7-A

Chain Ae

Large ribosomal subunit protein eL32

Chain Af

60S ribosomal protein L33-A