HL_9DOV_028

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UUGAUAUGAUG

Length

11 nucleotides

Bulged bases

9DOV|1|A1|U|1348, 9DOV|1|A1|G|1349, 9DOV|1|A1|A|1350, 9DOV|1|A1|U|1351, 9DOV|1|A1|A|1352, 9DOV|1|A1|U|1353, 9DOV|1|A1|G|1354, 9DOV|1|A1|U|1356

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|A1|U|1347
9DOV|1|A1|U|1348
9DOV|1|A1|G|1349
9DOV|1|A1|A|1350
9DOV|1|A1|U|1351
9DOV|1|A1|A|1352
9DOV|1|A1|U|1353
9DOV|1|A1|G|1354
9DOV|1|A1|A|1355
9DOV|1|A1|U|1356
9DOV|1|A1|G|1357

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AC

Large ribosomal subunit protein uL4A

Chain AE

60S ribosomal protein L6-A

Chain AQ

60S ribosomal protein L18-A

Chain Ae

Large ribosomal subunit protein eL32