HL_9DOV_033

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CCUGAUUUUAUGCAGG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|A1|C|1562
9DOV|1|A1|C|1563
9DOV|1|A1|U|1564
9DOV|1|A1|G|1565
9DOV|1|A1|A|1566
9DOV|1|A1|U|1567
9DOV|1|A1|U|1568
9DOV|1|A1|U|1569
9DOV|1|A1|U|1570
9DOV|1|A1|A|1571
9DOV|1|A1|U|1572
9DOV|1|A1|G|1573
9DOV|1|A1|C|1574
9DOV|1|A1|A|1575
9DOV|1|A1|G|1576
9DOV|1|A1|G|1577

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain AX

60S ribosomal protein L25