HL_9DOV_051

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

AAUUCAUUUU

Length

10 nucleotides

Bulged bases

9DOV|1|A1|U|2537, 9DOV|1|A1|A|2540, 9DOV|1|A1|U|2541, 9DOV|1|A1|U|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|A1|A|2535
9DOV|1|A1|A|2536
9DOV|1|A1|U|2537
9DOV|1|A1|U|2538
9DOV|1|A1|C|2539
9DOV|1|A1|A|2540
9DOV|1|A1|U|2541
9DOV|1|A1|U|2542
9DOV|1|A1|U|2543
9DOV|1|A1|U|2544

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AG

60S ribosomal protein L8-A

Chain Ag

60S ribosomal protein L34-A

Chain BB

Small ribosomal subunit protein eS1A