HL_9DOV_062

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

U(OMU)(OMG)UUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DOV_062 not in the Motif Atlas

Homologous match to HL_9PN5_061

Geometric discrepancy: 0.0641

The information below is about HL_9PN5_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

38

Unit IDs

9DOV|1|A1|U|2920
9DOV|1|A1|OMU|2921
9DOV|1|A1|OMG|2922
9DOV|1|A1|U|2923
9DOV|1|A1|U|2924
9DOV|1|A1|C|2925
9DOV|1|A1|A|2926

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3