HL_9DOV_081

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CGACCCUUUGGAAG

Length

14 nucleotides

Bulged bases

9DOV|1|B5|C|191, 9DOV|1|B5|U|192, 9DOV|1|B5|U|193, 9DOV|1|B5|U|194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|B5|C|186
9DOV|1|B5|G|187
9DOV|1|B5|A|188
9DOV|1|B5|C|189
9DOV|1|B5|C|190
9DOV|1|B5|C|191
9DOV|1|B5|U|192
9DOV|1|B5|U|193
9DOV|1|B5|U|194
9DOV|1|B5|G|195
9DOV|1|B5|G|196
9DOV|1|B5|A|197
9DOV|1|B5|A|198
9DOV|1|B5|G|199

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BI

40S ribosomal protein S8-A