HL_9DOV_084

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

9DOV|1|B5|U|277

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DOV_084 not in the Motif Atlas

Geometric match to HL_8VM9_005

Geometric discrepancy: 0.2386

The information below is about HL_8VM9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01957.2

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

9DOV|1|B5|C|276
9DOV|1|B5|U|277
9DOV|1|B5|U|278
9DOV|1|B5|G|279

Current chains

Chain B5

18S rRNA

Nearby chains