HL_9DOV_093

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC

Length

33 nucleotides

Bulged bases

9DOV|1|B5|U|705, 9DOV|1|B5|A|706, 9DOV|1|B5|A|707, 9DOV|1|B5|U|715, 9DOV|1|B5|C|716, 9DOV|1|B5|U|718, 9DOV|1|B5|U|719, 9DOV|1|B5|G|720, 9DOV|1|B5|U|721, 9DOV|1|B5|G|722, 9DOV|1|B5|C|726, 9DOV|1|B5|G|729, 9DOV|1|B5|C|731, 9DOV|1|B5|G|732, 9DOV|1|B5|A|733, 9DOV|1|B5|A|734

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|B5|G|703
9DOV|1|B5|C|704
9DOV|1|B5|U|705
9DOV|1|B5|A|706
9DOV|1|B5|A|707
9DOV|1|B5|C|708
9DOV|1|B5|C|709
9DOV|1|B5|U|710
9DOV|1|B5|U|711
9DOV|1|B5|G|712
9DOV|1|B5|A|713
9DOV|1|B5|G|714
9DOV|1|B5|U|715
9DOV|1|B5|C|716
9DOV|1|B5|C|717
9DOV|1|B5|U|718
9DOV|1|B5|U|719
9DOV|1|B5|G|720
9DOV|1|B5|U|721
9DOV|1|B5|G|722
9DOV|1|B5|G|723
9DOV|1|B5|C|724
9DOV|1|B5|U|725
9DOV|1|B5|C|726
9DOV|1|B5|U|727
9DOV|1|B5|U|728
9DOV|1|B5|G|729
9DOV|1|B5|G|730
9DOV|1|B5|C|731
9DOV|1|B5|G|732
9DOV|1|B5|A|733
9DOV|1|B5|A|734
9DOV|1|B5|C|735

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A