HL_9DOV_096

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

9DOV|1|B5|U|833

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|B5|A|829
9DOV|1|B5|U|830
9DOV|1|B5|U|831
9DOV|1|B5|U|832
9DOV|1|B5|U|833
9DOV|1|B5|G|834
9DOV|1|B5|U|835
9DOV|1|B5|U|836
9DOV|1|B5|G|837
9DOV|1|B5|G|838
9DOV|1|B5|U|839
9DOV|1|B5|U|840
9DOV|1|B5|U|841
9DOV|1|B5|C|842
9DOV|1|B5|U|843

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BG

40S ribosomal protein S6-A

Chain BL

40S ribosomal protein S11-A