HL_9DOV_100

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

9DOV|1|B5|U|1058, 9DOV|1|B5|U|1059, 9DOV|1|B5|U|1060

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|B5|U|1055
9DOV|1|B5|U|1056
9DOV|1|B5|U|1057
9DOV|1|B5|U|1058
9DOV|1|B5|U|1059
9DOV|1|B5|U|1060
9DOV|1|B5|A|1061
9DOV|1|B5|A|1062
9DOV|1|B5|U|1063
9DOV|1|B5|G|1064

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BB

Small ribosomal subunit protein eS1A

Chain Bb

40S ribosomal protein S27-A