HL_9DOV_101

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DOV_101 not in the Motif Atlas

Homologous match to HL_9PN5_099

Geometric discrepancy: 0.0524

The information below is about HL_9PN5_099

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9DOV|1|B5|A|1084
9DOV|1|B5|G|1085
9DOV|1|B5|A|1086
9DOV|1|B5|A|1087
9DOV|1|B5|A|1088
9DOV|1|B5|U|1089

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BC

Small ribosomal subunit protein uS5

Chain Ba

Small ribosomal subunit protein eS26B