HL_9DOV_104

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

9DOV|1|B5|G|1243, 9DOV|1|B5|G|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|B5|A|1238
9DOV|1|B5|U|1239
9DOV|1|B5|U|1240
9DOV|1|B5|G|1241
9DOV|1|B5|A|1242
9DOV|1|B5|G|1243
9DOV|1|B5|A|1244
9DOV|1|B5|G|1245
9DOV|1|B5|C|1246
9DOV|1|B5|U|1247

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BP

Small ribosomal subunit protein uS19

Chain Bd

Small ribosomal subunit protein uS14A

Chain Bf

RPS31 isoform 1