HL_9DOV_108

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

9DOV|1|B5|C|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DOV_108 not in the Motif Atlas

Geometric match to HL_9E6Q_009

Geometric discrepancy: 0.3011

The information below is about HL_9E6Q_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9DOV|1|B5|U|1396
9DOV|1|B5|U|1397
9DOV|1|B5|U|1398
9DOV|1|B5|C|1399
9DOV|1|B5|A|1400
9DOV|1|B5|A|1401
9DOV|1|B5|G|1402

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BR

40S ribosomal protein S17-A

Chain Bc

Small ribosomal subunit protein eS28A