HL_9DOV_114

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CUAUUUAG

Length

8 nucleotides

Bulged bases

9DOV|1|EC|A|6840, 9DOV|1|EC|U|6841, 9DOV|1|EC|U|6843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|EC|C|6838
9DOV|1|EC|U|6839
9DOV|1|EC|A|6840
9DOV|1|EC|U|6841
9DOV|1|EC|U|6842
9DOV|1|EC|U|6843
9DOV|1|EC|A|6844
9DOV|1|EC|G|6845

Current chains

Chain EC

TSV IRES RNA

Nearby chains

Chain BF

Rps5p

Chain BO

40S ribosomal protein S14-A