HL_9DOV_116

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CACUUUGGGCAAAGUAG

Length

17 nucleotides

Bulged bases

9DOV|1|EC|U|6902, 9DOV|1|EC|A|6914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|EC|C|6899
9DOV|1|EC|A|6900
9DOV|1|EC|C|6901
9DOV|1|EC|U|6902
9DOV|1|EC|U|6903
9DOV|1|EC|U|6904
9DOV|1|EC|G|6905
9DOV|1|EC|G|6906
9DOV|1|EC|G|6907
9DOV|1|EC|C|6908
9DOV|1|EC|A|6909
9DOV|1|EC|A|6910
9DOV|1|EC|A|6911
9DOV|1|EC|G|6912
9DOV|1|EC|U|6913
9DOV|1|EC|A|6914
9DOV|1|EC|G|6915

Current chains

Chain EC

TSV IRES RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain B5

Small subunit ribosomal RNA; SSU rRNA

Chain BP

Small ribosomal subunit protein uS19