HL_9DP7_006

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CAUAG

Length

5 nucleotides

Bulged bases

9DP7|1|A1|U|210, 9DP7|1|A1|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DP7_006 not in the Motif Atlas

Geometric match to HL_9AXU_006

Geometric discrepancy: 0.0371

The information below is about HL_9AXU_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.11

Basepair signature

cWW-F

Number of instances in this motif group

25

Unit IDs

9DP7|1|A1|C|208
9DP7|1|A1|A|209
9DP7|1|A1|U|210
9DP7|1|A1|A|211
9DP7|1|A1|G|212

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AC

Large ribosomal subunit protein uL4A

Chain AY

60S ribosomal protein L26-A