HL_9DP7_009

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GGUAAAUUCC

Length

10 nucleotides

Bulged bases

9DP7|1|A1|G|304, 9DP7|1|A1|U|305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|A1|G|303
9DP7|1|A1|G|304
9DP7|1|A1|U|305
9DP7|1|A1|A|306
9DP7|1|A1|A|307
9DP7|1|A1|A|308
9DP7|1|A1|U|309
9DP7|1|A1|U|310
9DP7|1|A1|C|311
9DP7|1|A1|C|312

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AN

60S ribosomal protein L15-A

Chain Aa

60S ribosomal protein L28

Chain Ai

60S ribosomal protein L36-A

Chain Ao

60S ribosomal protein L42-A