HL_9DP7_044

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UCUAAUU(1MA)AAA

Length

11 nucleotides

Bulged bases

9DP7|1|A1|A|2138, 9DP7|1|A1|A|2139, 9DP7|1|A1|U|2140, 9DP7|1|A1|A|2144

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|A1|U|2135
9DP7|1|A1|C|2136
9DP7|1|A1|U|2137
9DP7|1|A1|A|2138
9DP7|1|A1|A|2139
9DP7|1|A1|U|2140
9DP7|1|A1|U|2141
9DP7|1|A1|1MA|2142
9DP7|1|A1|A|2143
9DP7|1|A1|A|2144
9DP7|1|A1|A|2145

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain Aj

60S ribosomal protein L37-A