HL_9DP7_047

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GUA(A2M)CUAUGAC

Length

11 nucleotides

Bulged bases

9DP7|1|A1|A2M|2256

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|A1|G|2253
9DP7|1|A1|U|2254
9DP7|1|A1|A|2255
9DP7|1|A1|A2M|2256
9DP7|1|A1|C|2257
9DP7|1|A1|U|2258
9DP7|1|A1|A|2259
9DP7|1|A1|U|2260
9DP7|1|A1|G|2261
9DP7|1|A1|A|2262
9DP7|1|A1|C|2263

Current chains

Chain A1

25S rRNA

Nearby chains

Chain B5

Small subunit ribosomal RNA; SSU rRNA

Chain Be

40S ribosomal protein S30-A

Chain EC

TSV IRES RNA