HL_9DP7_054

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

U(UR3)AAACG(A2M)UAACG

Length

13 nucleotides

Bulged bases

9DP7|1|A1|A|2637, 9DP7|1|A1|C|2644

QA status

Modified nucleotides: UR3, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|A1|U|2633
9DP7|1|A1|UR3|2634
9DP7|1|A1|A|2635
9DP7|1|A1|A|2636
9DP7|1|A1|A|2637
9DP7|1|A1|C|2638
9DP7|1|A1|G|2639
9DP7|1|A1|A2M|2640
9DP7|1|A1|U|2641
9DP7|1|A1|A|2642
9DP7|1|A1|A|2643
9DP7|1|A1|C|2644
9DP7|1|A1|G|2645

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AI

Large ribosomal subunit protein uL16

Chain AT

60S ribosomal protein L21-A

Chain Ab

Large ribosomal subunit protein eL29