HL_9DP7_066
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CUGAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 9DP7|1|A1|G|3116, 9DP7|1|A1|C|3120
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DP7|1|A1|C|3110
9DP7|1|A1|U|3111
9DP7|1|A1|G|3112
9DP7|1|A1|A|3113
9DP7|1|A1|A|3114
9DP7|1|A1|C|3115
9DP7|1|A1|G|3116
9DP7|1|A1|C|3117
9DP7|1|A1|C|3118
9DP7|1|A1|U|3119
9DP7|1|A1|C|3120
9DP7|1|A1|U|3121
9DP7|1|A1|A|3122
9DP7|1|A1|A|3123
9DP7|1|A1|G|3124
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AH
- 60S ribosomal protein L9-A
- Chain AO
- 60S ribosomal protein L16-A
- Chain Am
- Ubiquitin-60S ribosomal protein L40
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