HL_9DP7_070

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

9DP7|1|A1|U|3351

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DP7_070 not in the Motif Atlas

Homologous match to HL_9PN5_069

Geometric discrepancy: 0.3378

The information below is about HL_9PN5_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72836.1

Basepair signature

cWW-F

Number of instances in this motif group

20

Unit IDs

9DP7|1|A1|C|3350
9DP7|1|A1|U|3351
9DP7|1|A1|U|3352
9DP7|1|A1|G|3353

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BI

40S ribosomal protein S8-A