HL_9DP7_074
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CAGCGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DP7|1|A4|C|47
9DP7|1|A4|A|48
9DP7|1|A4|G|49
9DP7|1|A4|C|50
9DP7|1|A4|G|51
9DP7|1|A4|A|52
9DP7|1|A4|A|53
9DP7|1|A4|A|54
9DP7|1|A4|U|55
9DP7|1|A4|G|56
Current chains
- Chain A4
- 5.8S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AX
- 60S ribosomal protein L25
- Chain Ah
- 60S ribosomal protein L35-A
- Chain Aj
- 60S ribosomal protein L37-A
- Chain Al
- 60S ribosomal protein L39
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