HL_9DP7_097

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DP7_097 not in the Motif Atlas

Homologous match to HL_9H3G_093

Geometric discrepancy: 0.2431

The information below is about HL_9H3G_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9DP7|1|B5|A|900
9DP7|1|B5|G|901
9DP7|1|B5|G|902
9DP7|1|B5|U|903
9DP7|1|B5|G|904
9DP7|1|B5|A|905
9DP7|1|B5|A|906
9DP7|1|B5|A|907
9DP7|1|B5|U|908
9DP7|1|B5|U|909

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BO

40S ribosomal protein S14-A