HL_9DPB_001

3D structure

PDB id

9DPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LysRS bound to unmodified tRNA-Lys3 (Undocked State, AMPCPP bound)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

9DPB|1|C|U|16, 9DPB|1|C|C|17, 9DPB|1|C|G|18, 9DPB|1|C|G|19, 9DPB|1|C|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DPB_001 not in the Motif Atlas

Homologous match to HL_7MRL_001

Geometric discrepancy: 0.1351

The information below is about HL_7MRL_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

9DPB|1|C|C|13
9DPB|1|C|A|14
9DPB|1|C|G|15
9DPB|1|C|U|16
9DPB|1|C|C|17
9DPB|1|C|G|18
9DPB|1|C|G|19
9DPB|1|C|U|20
9DPB|1|C|A|21
9DPB|1|C|G|22

Current chains

Chain C

tRNA-Lys3 (unmodified)

Nearby chains