HL_9DPB_002

3D structure

PDB id

9DPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LysRS bound to unmodified tRNA-Lys3 (Undocked State, AMPCPP bound)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACUUUUAAU

Length

9 nucleotides

Bulged bases

9DPB|1|C|U|33, 9DPB|1|C|U|34, 9DPB|1|C|A|37

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DPB_002 not in the Motif Atlas

Homologous match to HL_3KFU_005

Geometric discrepancy: 0.2972

The information below is about HL_3KFU_005

Detailed Annotation

tRNA anticodon loop with synthetase

Broad Annotation

Anticodon loop

Motif group

HL_69186.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9DPB|1|C|A|31
9DPB|1|C|C|32
9DPB|1|C|U|33
9DPB|1|C|U|34
9DPB|1|C|U|35
9DPB|1|C|U|36
9DPB|1|C|A|37
9DPB|1|C|A|38
9DPB|1|C|U|39

Current chains

Chain C

tRNA-Lys3 (unmodified)

Nearby chains

Chain A

Lysine--tRNA ligase