HL_9DUK_019

3D structure

PDB id

9DUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of mutant 30S subunit with extended helix 26, version 3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GAUG(5MC)AACGC

Length

10 nucleotides

Bulged bases

9DUK|1|A|U|965, 9DUK|1|A|G|971

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DUK_019 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.3492

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9DUK|1|A|G|963
9DUK|1|A|A|964
9DUK|1|A|U|965
9DUK|1|A|G|966
9DUK|1|A|5MC|967
9DUK|1|A|A|968
9DUK|1|A|A|969
9DUK|1|A|C|970
9DUK|1|A|G|971
9DUK|1|A|C|972

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9

Chain J

Small ribosomal subunit protein uS10

Chain M

30S ribosomal protein S13