HL_9DUK_023

3D structure

PDB id

9DUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of mutant 30S subunit with extended helix 26, version 3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

9DUK|1|A|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DUK_023 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1373

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

9DUK|1|A|G|1089
9DUK|1|A|U|1090
9DUK|1|A|U|1091
9DUK|1|A|A|1092
9DUK|1|A|A|1093
9DUK|1|A|G|1094
9DUK|1|A|U|1095
9DUK|1|A|C|1096

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain G

30S ribosomal protein S7

Chain U

30S ribosomal protein S21