HL_9DUL_005

3D structure

PDB id

9DUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of mutant 30S subunit with extended helix 26, version 4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

9DUL|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DUL_005 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.0779

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9DUL|1|A|G|259
9DUL|1|A|G|260
9DUL|1|A|U|261
9DUL|1|A|A|262
9DUL|1|A|A|263
9DUL|1|A|C|264
9DUL|1|A|G|265
9DUL|1|A|G|266
9DUL|1|A|C|267

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS17

Chain T

Small ribosomal subunit protein bS20