HL_9E0N_017
3D structure
- PDB id
- 9E0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis unmethylated 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.24 Å
Loop
- Sequence
- UUUUGAAGAA
- Length
- 10 nucleotides
- Bulged bases
- 9E0N|1|A|A|666
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9E0N_017 not in the Motif Atlas
- Geometric match to HL_7A0S_018
- Geometric discrepancy: 0.2296
- The information below is about HL_7A0S_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9E0N|1|A|U|658
9E0N|1|A|U|659
9E0N|1|A|U|660
9E0N|1|A|U|661
9E0N|1|A|G|662
9E0N|1|A|A|663
9E0N|1|A|A|664
9E0N|1|A|G|665
9E0N|1|A|A|666
9E0N|1|A|A|667
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL32
- Chain 8
- 50S ribosomal protein bL37
- Chain D
- Large ribosomal subunit protein uL3
- Chain M
- Large ribosomal subunit protein uL15
- Chain R
- Large ribosomal subunit protein bL20
- Chain S
- Large ribosomal subunit protein bL21
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