9E0N Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9E0N_001 | 1/A/56:65 | Pseudoknot geometry | geometric HL_7A0S_014 HL_30680.4 | |
| HL_9E0N_002 | 1/A/84:93 | No text annotation | ||
| HL_9E0N_003 | 1/A/120:125 | No text annotation | geometric HL_5J7L_136 NA | |
| HL_9E0N_004 | 1/A/134:141 | GNRA wlth tandem sheared | geometric HL_4WF9_004 HL_98423.1 | |
| HL_9E0N_005 | 1/A/157:167 | No text annotation | geometric HL_5J7L_138 NA | |
| HL_9E0N_006 | 1/A/193:200 | No text annotation | geometric HL_4V9F_006 HL_48677.1 | |
| HL_9E0N_007 | 1/A/224:230 | No text annotation | geometric HL_7ENI_002 NA | |
| HL_9E0N_008 | 1/A/246:252 | No text annotation | geometric HL_4WF9_008 HL_76371.1 | |
| HL_9E0N_010 | 1/A/387:394 | T-loop with 2 stacked bulged bases | geometric HL_4V9F_010 HL_13999.1 | |
| HL_9E0N_011 | 1/A/401:405 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_9E0N_012 | 1/A/409:417 | T-loop with unstacked turn | geometric HL_5J7L_144 NA | |
| HL_9E0N_013 | 1/A/469:481 | No text annotation | ||
| HL_9E0N_014 | 1/A/498:505 | Pseudoknot geometry | geometric HL_7A0S_014 HL_30680.4 | |
| HL_9E0N_015 | 1/A/550:555 | GNRA | geometric HL_5J7L_027 NA | |
| HL_9E0N_016 | 1/A/575:580 | GNRA | geometric HL_4WF9_060 HL_34789.1 | |
| HL_9E0N_017 | 1/A/658:667 | T-loop with 2 stacked bulged bases | geometric HL_7A0S_018 HL_33597.1 | |
| HL_9E0N_018 | 1/A/705:710 | No text annotation | geometric HL_1WZ2_007 HL_75660.6 | |
| HL_9E0N_019 | 1/A/723:728 | GNRA | geometric HL_4WF9_020 HL_34789.1 | |
| HL_9E0N_021 | 1/A/755:760 | No text annotation | geometric HL_8CRE_220 HL_89167.1 | |
| HL_9E0N_022 | 1/A/827:834 | GNRA wlth tandem sheared | geometric HL_3HHN_010 HL_68642.1 | |
| HL_9E0N_023 | 1/A/859:868 | No text annotation | geometric HL_4WF9_023 HL_50204.1 | |
| HL_9E0N_024 | 1/A/894:900 | No text annotation | geometric HL_5J7L_156 NA | |
| HL_9E0N_025 | 1/A/941:946 | No text annotation | geometric HL_7A0S_024 HL_27530.1 | |
| HL_9E0N_026 | 1/A/1072:1079 | GNRA | geometric HL_7A0S_026 HL_34789.1 | |
| HL_9E0N_027 | 1/A/1096:1103 | No text annotation | geometric HL_4WF9_028 HL_47171.1 | |
| HL_9E0N_031 | 1/A/1336:1341 | GNRA | geometric HL_7A0S_031 HL_34789.1 | |
| HL_9E0N_032 | 1/A/1396:1404 | T-loop with 2 stacked bulged bases | geometric HL_8CRE_030 NA | |
| HL_9E0N_033 | 1/A/1439:1445 | Pseudoknot geometry with 3' bulge | geometric HL_4V9F_035 HL_49081.1 | |
| HL_9E0N_034 | 1/A/1478:1483 | GNRA | geometric HL_5J7L_167 NA | |
| HL_9E0N_035 | 1/A/1504:1513 | No text annotation | geometric HL_4V9F_037 HL_77449.1 | |
| HL_9E0N_037 | 1/A/1671:1682 | No text annotation | ||
| HL_9E0N_038 | 1/A/1712:1718 | Pseudoknot geometry with 3' bulge | geometric HL_5J7L_170 NA | |
| HL_9E0N_039 | 1/A/1785:1788 | Mini UNCG | geometric HL_4V9F_041 HL_90436.1 | |
| HL_9E0N_040 | 1/A/1830:1837 | No text annotation | geometric HL_5J7L_173 NA | |
| HL_9E0N_041 | 1/A/1848:1854 | GNRA | geometric HL_5LM7_001 HL_34789.1 | |
| HL_9E0N_042 | 1/A/1909:1914 | UNCG | geometric HL_1I6U_001 HL_61337.1 | |
| HL_9E0N_043 | 1/A/1969:1973 | No text annotation | geometric HL_9DFE_042 HL_80709.4 | |
| HL_9E0N_044 | 1/A/1994:2004 | No text annotation | geometric HL_8P9A_157 HL_87681.1 | |
| HL_9E0N_045 | 1/A/2023:2028 | GNRA | geometric HL_7A0S_016 HL_34789.1 | |
| HL_9E0N_047 | 1/A/2134:2144 | No text annotation | geometric HL_9DFE_046 HL_82185.1 | |
| HL_9E0N_048 | 1/A/2174:2180 | No text annotation | ||
| HL_9E0N_049 | 1/A/2251:2260 | No text annotation | geometric HL_4WF9_047 HL_78372.1 | |
| HL_9E0N_051 | 1/A/2432:2439 | No text annotation | geometric HL_5J7L_185 NA | |
| HL_9E0N_052 | 1/A/2472:2480 | No text annotation | geometric HL_8CRE_053 NA | |
| HL_9E0N_053 | 1/A/2488:2500 | No text annotation | geometric HL_4V9F_056 HL_02042.1 | |
| HL_9E0N_055 | 1/A/2548:2555 | Pseudoknot geometry | geometric HL_8CRE_056 NA | |
| HL_9E0N_056 | 1/A/2579:2586 | GNRA with extra cWW | geometric HL_4WF9_053 HL_45359.1 | |
| HL_9E0N_058 | 1/A/2628:2637 | No text annotation | geometric HL_7A0S_058 HL_51853.1 | |
| HL_9E0N_059 | 1/A/2695:2703 | No text annotation | geometric HL_4WF9_056 HL_52011.1 | |
| HL_9E0N_060 | 1/A/2752:2759 | GNRA variation | geometric HL_5J7L_194 NA | |
| HL_9E0N_061 | 1/A/2775:2781 | No text annotation | geometric HL_7A0S_061 HL_48677.1 | |
| HL_9E0N_062 | 1/A/2818:2823 | GNRA variation | geometric HL_5J7L_180 NA | |
| HL_9E0N_063 | 1/A/2882:2887 | GNRA | geometric HL_5B2P_001 HL_34789.1 | |
| HL_9E0N_064 | 1/A/2925:2930 | Ribsomal LSU H95 | geometric HL_5J7L_198 NA | |
| HL_9E0N_065 | 1/A/2969:2983 | No text annotation | geometric HL_8CRE_066 NA | |
| HL_9E0N_067 | 1/A/3040:3048 | No text annotation | geometric HL_9DFE_065 HL_37889.1 | |
| HL_9E0N_068 | 1/A/3077:3082 | GNRA | geometric HL_7A0S_062 HL_34789.1 | |
| HL_9E0N_071 | 1/a/16:26 | No text annotation | geometric HL_8CRE_191 HL_31940.1 | |
| HL_9E0N_073 | 1/a/155:160 | GNRA | geometric HL_6JDV_002 HL_34789.1 | |
| HL_9E0N_074 | 1/a/191:196 | No text annotation | ||
| HL_9E0N_075 | 1/a/213:218 | No text annotation | geometric HL_7VTI_001 NA | |
| HL_9E0N_076 | 1/a/259:267 | GNRA related | geometric HL_4LFB_006 HL_36455.1 | |
| HL_9E0N_077 | 1/a/296:301 | GNRA | geometric HL_6WPI_001 HL_34789.1 | |
| HL_9E0N_078 | 1/a/320:333 | No text annotation | ||
| HL_9E0N_079 | 1/a/342:347 | UNCG | geometric HL_1YLS_001 HL_61337.1 | |
| HL_9E0N_080 | 1/a/379:384 | GNRA | geometric HL_8CRE_222 HL_34789.1 | |
| HL_9E0N_083 | 1/a/502:507 | GNRA variation | geometric HL_4LFB_033 HL_34789.1 | |
| HL_9E0N_084 | 1/a/597:603 | GNRA-like with tWH | geometric HL_4LFB_014 HL_92337.1 | |
| HL_9E0N_085 | 1/a/669:678 | No text annotation | geometric HL_4LFB_015 HL_38491.1 | |
| HL_9E0N_086 | 1/a/706:711 | GNRA | geometric HL_5J7L_016 NA | |
| HL_9E0N_087 | 1/a/766:776 | No text annotation | geometric HL_8CRE_212 HL_38491.1 | |
| HL_9E0N_088 | 1/a/844:849 | GNRA | geometric HL_3NVI_002 NA | |
| HL_9E0N_089 | 1/a/878:885 | GNRA with extra cWW | geometric HL_7A0S_056 HL_45359.1 | |
| HL_9E0N_100 | 1/a/1432:1438 | No text annotation | ||
| HL_9E0N_101 | 1/a/1499:1504 | GNRA | geometric HL_5J7L_031 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9E0N_009 | No text annotation | ||
| HL_9E0N_020 | GNRA | ||
| HL_9E0N_028 | No text annotation | ||
| HL_9E0N_029 | GNRA wlth tandem sheared | ||
| HL_9E0N_030 | No text annotation | ||
| HL_9E0N_036 | No text annotation | ||
| HL_9E0N_046 | No text annotation | ||
| HL_9E0N_050 | No text annotation | ||
| HL_9E0N_054 | No text annotation | ||
| HL_9E0N_057 | GNRA | ||
| HL_9E0N_066 | No text annotation | ||
| HL_9E0N_069 | No text annotation | ||
| HL_9E0N_070 | No text annotation | ||
| HL_9E0N_072 | UNCG variation | ||
| HL_9E0N_081 | No text annotation | ||
| HL_9E0N_082 | No text annotation | ||
| HL_9E0N_090 | No text annotation | ||
| HL_9E0N_091 | GNRA related | ||
| HL_9E0N_092 | No text annotation | ||
| HL_9E0N_093 | GNRA | ||
| HL_9E0N_094 | No text annotation | ||
| HL_9E0N_095 | No text annotation | ||
| HL_9E0N_096 | GNRA related | ||
| HL_9E0N_097 | No text annotation | ||
| HL_9E0N_098 | T-loop with 3 stacked bulged bases | ||
| HL_9E0N_099 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9E0N_001 | 1/A/21:27, 1/A/597:603 | Triple sheared with non-canonical cWW | geometric IL_4WF9_001 IL_22311.1 | |
| IL_9E0N_002 | 1/A/33:34, 1/A/530:532 | Single bulged A | geometric IL_7A0S_002 IL_14190.1 | |
| IL_9E0N_003 | 1/A/40:41, 1/A/522:524 | Minor groove platform | geometric IL_5J7L_247 NA | |
| IL_9E0N_004 | 1/A/78:82, 1/A/95:102 | Kink-turn | geometric IL_7A0S_004 IL_94910.1 | |
| IL_9E0N_005 | 1/A/182:183, 1/A/211:213 | Single stack bend | geometric IL_8P9A_328 IL_15011.1 | |
| IL_9E0N_006 | 1/A/187:193, 1/A/200:207 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_4V9F_006 IL_62167.1 | |
| IL_9E0N_007 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_9DFE_007 IL_02666.1 | |
| IL_9E0N_008 | 1/A/283:290, 1/A/298:303 | No text annotation | ||
| IL_9E0N_009 | 1/A/322:325, 1/A/450:454 | No text annotation | ||
| IL_9E0N_011 | 1/A/369:371, 1/A/432:433 | No text annotation | ||
| IL_9E0N_012 | 1/A/374:376, 1/A/425:429 | No text annotation | geometric IL_5J7L_254 NA | |
| IL_9E0N_013 | 1/A/382:384, 1/A/397:398 | Single bulged U | geometric IL_3TZR_002 NA | |
| IL_9E0N_014 | 1/A/569:572, 1/A/583:596 | No text annotation | geometric IL_8P9A_243 IL_44923.1 | |
| IL_9E0N_016 | 1/A/630:631, 1/A/640:642 | Single bulged U | geometric IL_1S03_005 IL_97561.1 | |
| IL_9E0N_017 | 1/A/656:658, 1/A/667:669 | Isolated non-canonical cWW pair | geometric IL_3GM7_006 IL_01003.1 | |
| IL_9E0N_018 | 1/A/683:685, 1/A/780:781 | No text annotation | geometric IL_8ZA0_002 IL_28408.1 | |
| IL_9E0N_019 | 1/A/699:703, 1/A/712:716 | No text annotation | geometric IL_9DFE_014 IL_66798.3 | |
| IL_9E0N_020 | 1/A/787:789, 1/A/921:923 | Isolated non-canonical cWW pair | geometric IL_8P9A_255 IL_01003.1 | |
| IL_9E0N_021 | 1/A/789:793, 1/A/914:921 | No text annotation | geometric IL_9DFE_016 IL_73855.1 | |
| IL_9E0N_022 | 1/A/812:813, 1/A/878:880 | Single bulged A | geometric IL_4V9F_025 IL_14190.1 | |
| IL_9E0N_023 | 1/A/817:822, 1/A/839:845 | No text annotation | geometric IL_8P9A_451 IL_57885.1 | |
| IL_9E0N_024 | 1/A/853:855, 1/A/872:873 | Major groove platform | geometric IL_5J7L_264 NA | |
| IL_9E0N_025 | 1/A/890:892, 1/A/902:906 | Multiple bulged bases | geometric IL_4V9F_030 IL_57881.1 | |
| IL_9E0N_026 | 1/A/952:953, 1/A/1057:1059 | Single stack bend | geometric IL_7A0S_005 IL_15011.1 | |
| IL_9E0N_027 | 1/A/959:961, 1/A/1048:1051 | No text annotation | ||
| IL_9E0N_028 | 1/A/961:964, 1/A/1043:1048 | No text annotation | ||
| IL_9E0N_029 | 1/A/971:977, 1/A/1030:1036 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 NA | |
| IL_9E0N_030 | 1/A/977:978, 1/A/1028:1030 | Minor groove platform | geometric IL_4V9F_034 IL_34520.1 | |
| IL_9E0N_031 | 1/A/979:984, 1/A/1024:1027 | C-loop | geometric IL_4WF9_033 IL_16301.1 | |
| IL_9E0N_032 | 1/A/986:988, 1/A/1020:1022 | Isolated near basepair | geometric IL_3NJ7_003 IL_42997.4 | |
| IL_9E0N_036 | 1/A/1112:1114, 1/A/1278:1279 | Single bulged C | geometric IL_5J7L_276 NA | |
| IL_9E0N_037 | 1/A/1116:1120, 1/A/1272:1276 | UAA/GAN | geometric IL_4WF9_036 IL_08938.1 | |
| IL_9E0N_038 | 1/A/1122:1129, 1/A/1269:1270 | SSU/LSU pseudoknot | geometric IL_4WF9_037 IL_11411.1 | |
| IL_9E0N_041 | 1/A/1142:1148, 1/A/1242:1258 | No text annotation | geometric IL_5J7L_281 NA | |
| IL_9E0N_042 | 1/A/1149:1152, 1/A/1239:1241 | Isolated non-canonical cWW pair | geometric IL_7A0S_038 IL_30229.1 | |
| IL_9E0N_046 | 1/A/1311:1313, 1/A/1362:1365 | Isolated cWS basepair | geometric IL_7A0S_041 IL_42997.4 | |
| IL_9E0N_047 | 1/A/1322:1329, 1/A/1349:1353 | Kink-turn | geometric IL_7EAG_003 IL_90775.1 | |
| IL_9E0N_048 | 1/A/1333:1334, 1/A/1343:1345 | Single bulged A | geometric IL_1U9S_001 NA | |
| IL_9E0N_049 | 1/A/1377:1384, 1/A/2235:2241 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_289 NA | |
| IL_9E0N_050 | 1/A/1425:1428, 1/A/1821:1822 | Major groove platform; stack outside cWW | geometric IL_5J7L_290 NA | |
| IL_9E0N_051 | 1/A/1434:1438, 1/A/1446:1448 | Major groove minor groove platform with tHH | geometric IL_4WF9_050 IL_06671.1 | |
| IL_9E0N_052 | 1/A/1466:1470, 1/A/1491:1495 | UAA/GAN | geometric IL_7A0S_048 IL_89021.3 | |
| IL_9E0N_053 | 1/A/1472:1476, 1/A/1485:1489 | tSH-tHW-tHS | geometric IL_5J7L_293 NA | |
| IL_9E0N_058 | 1/A/1638:1642, 1/A/1797:1800 | No text annotation | geometric IL_9DFE_009 IL_74317.1 | |
| IL_9E0N_059 | 1/A/1653:1656, 1/A/1777:1781 | tWW and non-canonical cWW | geometric IL_4PMI_008 NA | |
| IL_9E0N_060 | 1/A/1658:1661, 1/A/1771:1775 | No text annotation | geometric IL_9DFE_056 IL_74317.1 | |
| IL_9E0N_061 | 1/A/1689:1692, 1/A/1742:1746 | No text annotation | geometric IL_5J7L_299 NA | |
| IL_9E0N_062 | 1/A/1694:1699, 1/A/1735:1740 | No text annotation | ||
| IL_9E0N_063 | 1/A/1702:1703, 1/A/1726:1732 | No text annotation | ||
| IL_9E0N_064 | 1/A/1709:1711, 1/A/1719:1720 | Major groove intercalation | geometric IL_7JNH_003 NA | |
| IL_9E0N_065 | 1/A/1869:1874, 1/A/2228:2230 | No text annotation | ||
| IL_9E0N_066 | 1/A/1881:1883, 1/A/2219:2221 | No text annotation | geometric IL_8CRE_080 NA | |
| IL_9E0N_067 | 1/A/1884:1887, 1/A/2217:2218 | Major groove platform; stack outside cWW | geometric IL_1G1X_001 NA | |
| IL_9E0N_068 | 1/A/1884:1892, 1/A/2214:2218 | No text annotation | geometric IL_8P9A_305 IL_80252.1 | |
| IL_9E0N_069 | 1/A/1887:1892, 1/A/2214:2217 | No text annotation | geometric IL_8P9A_306 IL_28217.1 | |
| IL_9E0N_070 | 1/A/1904:1909, 1/A/1914:1920 | tSH-tSH-tHH-tHS | geometric IL_5J7L_308 NA | |
| IL_9E0N_071 | 1/A/1930:1934, 1/A/1960:1963 | Tandem non-canonical cWW pairs | geometric IL_5J7L_296 NA | |
| IL_9E0N_072 | 1/A/1937:1942, 1/A/1952:1957 | No text annotation | geometric IL_8ZA4_001 NA | |
| IL_9E0N_073 | 1/A/1987:1988, 1/A/2204:2206 | Single bulged A | geometric IL_4V9F_064 IL_14190.1 | |
| IL_9E0N_074 | 1/A/2015:2021, 1/A/2030:2038 | Kink-turn related | geometric IL_5J7L_313 NA | |
| IL_9E0N_075 | 1/A/2054:2057, 1/A/2126:2127 | Minor groove platform, major groove intercalation | geometric IL_1U9S_005 NA | |
| IL_9E0N_076 | 1/A/2058:2059, 1/A/2122:2125 | Major groove intercalation | geometric IL_8P9A_313 IL_71421.1 | |
| IL_9E0N_077 | 1/A/2063:2066, 1/A/2117:2118 | Major groove minor groove platform; mini C-loop | geometric IL_5J7L_316 NA | |
| IL_9E0N_078 | 1/A/2068:2072, 1/A/2111:2115 | UAA/GAN with extra stack | geometric IL_9DFE_074 IL_89021.3 | |
| IL_9E0N_079 | 1/A/2073:2078, 1/A/2105:2110 | No text annotation | geometric IL_8CRE_028 NA | |
| IL_9E0N_080 | 1/A/2081:2084, 1/A/2098:2102 | UAA/GAN related | geometric IL_5J7L_317 NA | |
| IL_9E0N_081 | 1/A/2157:2158, 1/A/2188:2191 | Bulged stacked bases | geometric IL_5J7L_318 NA | |
| IL_9E0N_082 | 1/A/2158:2169, 1/A/2185:2188 | No text annotation | ||
| IL_9E0N_084 | 1/A/2278:2280, 1/A/2836:2839 | No text annotation | ||
| IL_9E0N_085 | 1/A/2293:2294, 1/A/2662:2665 | Minor groove platform | geometric IL_8P9A_322 IL_34520.1 | |
| IL_9E0N_086 | 1/A/2304:2306, 1/A/2460:2463 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_87316.1 | |
| IL_9E0N_087 | 1/A/2308:2310, 1/A/2456:2458 | Isolated non-canonical cWW pair | geometric IL_7A0S_078 IL_71625.1 | |
| IL_9E0N_088 | 1/A/2317:2319, 1/A/2416:2418 | Isolated non-canonical cWW pair | geometric IL_8P9A_270 IL_01003.1 | |
| IL_9E0N_092 | 1/A/2425:2427, 1/A/2444:2445 | Single bulged C | geometric IL_6XKO_001 IL_05642.1 | |
| IL_9E0N_096 | 1/A/2678:2679, 1/A/2720:2722 | Major groove platform | geometric IL_4LFB_024 IL_48076.7 | |
| IL_9E0N_098 | 1/A/2683:2685, 1/A/2713:2717 | Major groove minor groove platform with extra cWW | geometric IL_5J7L_337 NA | |
| IL_9E0N_099 | 1/A/2685:2687, 1/A/2711:2713 | Isolated non-canonical cWW pair | geometric IL_5J7L_363 NA | |
| IL_9E0N_100 | 1/A/2690:2694, 1/A/2704:2708 | Double sheared with non-canonical cWW | geometric IL_7A0S_087 IL_87767.1 | |
| IL_9E0N_101 | 1/A/2731:2732, 1/A/2804:2806 | No text annotation | geometric IL_8P9A_334 IL_46637.1 | |
| IL_9E0N_102 | 1/A/2734:2736, 1/A/2798:2802 | Isolated non-canonical cWW with bulges | geometric IL_4WF9_095 IL_68118.1 | |
| IL_9E0N_103 | 1/A/2736:2737, 1/A/2795:2798 | No text annotation | geometric IL_9DFE_098 IL_44609.1 | |
| IL_9E0N_104 | 1/A/2746:2747, 1/A/2764:2767 | Major groove platform with intercalation | geometric IL_7A0S_091 IL_94991.1 | |
| IL_9E0N_105 | 1/A/2815:2816, 1/A/2825:2827 | Single bulged A | geometric IL_8P9A_399 IL_14190.1 | |
| IL_9E0N_106 | 1/A/2860:2864, 1/A/2998:3006 | No text annotation | geometric IL_9DFE_101 IL_04638.4 | |
| IL_9E0N_107 | 1/A/2876:2882, 1/A/2887:2892 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7A0S_094 IL_16458.5 | |
| IL_9E0N_108 | 1/A/2900:2901, 1/A/2954:2956 | Single stack bend | geometric IL_4WF9_089 IL_15011.1 | |
| IL_9E0N_109 | 1/A/2904:2908, 1/A/2949:2951 | C-loop | geometric IL_8CRE_445 IL_63596.12 | |
| IL_9E0N_110 | 1/A/2911:2915, 1/A/2942:2946 | UAA/GAN related, with intercalation | geometric IL_4WF9_102 IL_82016.1 | |
| IL_9E0N_111 | 1/A/2919:2920, 1/A/2935:2938 | Multiple bulged bases | geometric IL_7A0S_097 IL_44609.1 | |
| IL_9E0N_112 | 1/A/2961:2966, 1/A/2986:2991 | UAA/GAN with extra cWW | geometric IL_5J7L_350 NA | |
| IL_9E0N_113 | 1/A/3059:3061, 1/A/3098:3101 | Isolated non-canonical cWW with bulges | geometric IL_5ML7_010 IL_68118.1 | |
| IL_9E0N_114 | 1/A/3064:3066, 1/A/3092:3095 | Decoding loop related | geometric IL_7A0S_100 IL_05502.1 | |
| IL_9E0N_115 | 1/A/3068:3074, 1/A/3085:3090 | No text annotation | ||
| IL_9E0N_120 | 1/a/34:36, 1/a/532:533 | Single bulged G | geometric IL_5J7L_001 NA | |
| IL_9E0N_121 | 1/a/48:49, 1/a/396:398 | Single bulged A | geometric IL_4LFB_002 IL_14190.1 | |
| IL_9E0N_122 | 1/a/51:56, 1/a/359:361 | No text annotation | geometric IL_5J7L_003 NA | |
| IL_9E0N_123 | 1/a/58:60, 1/a/356:357 | Minor groove platform | geometric IL_8P9A_377 IL_34520.1 | |
| IL_9E0N_124 | 1/a/67:70, 1/a/99:100 | Multiple bulged bases | geometric IL_5W1H_001 IL_71421.1 | |
| IL_9E0N_125 | 1/a/71:73, 1/a/95:98 | Minor groove platform with extra cWW | geometric IL_5J7L_006 NA | |
| IL_9E0N_126 | 1/a/74:78, 1/a/91:94 | No text annotation | ||
| IL_9E0N_127 | 1/a/125:128, 1/a/231:232 | Multiple bulged bases | geometric IL_1R3E_001 IL_44609.1 | |
| IL_9E0N_128 | 1/a/129:133, 1/a/227:230 | No text annotation | geometric IL_4LFB_008 IL_60988.1 | |
| IL_9E0N_129 | 1/a/144:150, 1/a/165:172 | tWH-tWH-tHW-tHW | geometric IL_5J7L_012 NA | |
| IL_9E0N_131 | 1/a/242:247, 1/a/277:284 | Kink-turn with non-sequential stacking | geometric IL_5J7L_014 NA | |
| IL_9E0N_132 | 1/a/249:252, 1/a/274:275 | No text annotation | geometric IL_5Y58_001 IL_45649.1 | |
| IL_9E0N_133 | 1/a/292:293, 1/a/304:308 | C-loop | geometric IL_4LFB_013 IL_06671.1 | |
| IL_9E0N_134 | 1/a/367:369, 1/a/392:393 | Single bulged U | geometric IL_5J7L_017 NA | |
| IL_9E0N_135 | 1/a/371:376, 1/a/387:390 | No text annotation | ||
| IL_9E0N_136 | 1/a/409:416, 1/a/427:433 | No text annotation | geometric IL_4LFB_017 IL_62329.1 | |
| IL_9E0N_137 | 1/a/440:442, 1/a/472:477 | No text annotation | geometric IL_5J7L_021 NA | |
| IL_9E0N_138 | 1/a/446:450, 1/a/463:468 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_4LFB_018 IL_82100.1 | |
| IL_9E0N_139 | 1/a/450:453, 1/a/460:463 | No text annotation | ||
| IL_9E0N_140 | 1/a/484:491, 1/a/520:521 | SSU/LSU pseudoknot | geometric IL_4LFB_020 IL_11411.1 | |
| IL_9E0N_141 | 1/a/495:501, 1/a/508:516 | No text annotation | ||
| IL_9E0N_142 | 1/a/549:555, 1/a/862:863 | No text annotation | geometric IL_5J7L_026 NA | |
| IL_9E0N_143 | 1/a/560:564, 1/a/737:741 | tSH-tHW-tHS | geometric IL_4WF9_052 IL_05821.1 | |
| IL_9E0N_144 | 1/a/574:576, 1/a/624:625 | Major groove platform | geometric IL_3OXE_003 IL_48076.7 | |
| IL_9E0N_145 | 1/a/577:578, 1/a/620:623 | Major groove minor groove platform; mini C-loop | geometric IL_4LFB_025 IL_73108.1 | |
| IL_9E0N_146 | 1/a/584:591, 1/a/609:614 | No text annotation | ||
| IL_9E0N_147 | 1/a/634:635, 1/a/731:734 | Major groove platform; stack outside cWW | geometric IL_8P9A_417 IL_74641.1 | |
| IL_9E0N_148 | 1/a/636:638, 1/a/727:730 | No text annotation | ||
| IL_9E0N_149 | 1/a/642:646, 1/a/720:723 | Tandem non-canonical cWW pairs | geometric IL_5J7L_033 NA | |
| IL_9E0N_150 | 1/a/653:657, 1/a/693:697 | Triple non-canonical cWW pairs | geometric IL_4LFB_065 IL_71154.1 | |
| IL_9E0N_151 | 1/a/664:668, 1/a/679:686 | Kink-turn | geometric IL_4V9F_031 IL_94910.1 | |
| IL_9E0N_152 | 1/a/754:758, 1/a/784:785 | Left turn | geometric IL_4LFB_032 IL_29346.3 | |
| IL_9E0N_153 | 1/a/759:763, 1/a/779:783 | tSH-tHW-tHS | geometric IL_8CRE_438 IL_05821.1 | |
| IL_9E0N_154 | 1/a/814:816, 1/a/833:834 | Single stack bend | geometric IL_7A0S_054 IL_15011.1 | |
| IL_9E0N_155 | 1/a/816:818, 1/a/831:833 | No text annotation | ||
| IL_9E0N_156 | 1/a/818:819, 1/a/829:831 | Single stack bend | geometric IL_7KGA_003 NA | |
| IL_9E0N_157 | 1/a/869:876, 1/a/887:892 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | geometric IL_5J7L_038 NA | |
| IL_9E0N_158 | 1/a/904:905, 1/a/1376:1378 | Single bulged A | geometric IL_8CRE_443 IL_14190.1 | |
| IL_9E0N_159 | 1/a/907:909, 1/a/1373:1374 | Single bulged G | geometric IL_4LFB_036 IL_28408.1 | |
| IL_9E0N_171 | 1/a/1382:1384, 1/a/1485:1488 | No text annotation | geometric IL_8CRE_466 IL_18228.1 | |
| IL_9E0N_172 | 1/a/1384:1387, 1/a/1481:1485 | No text annotation | geometric IL_4LFB_068 IL_25873.1 | |
| IL_9E0N_173 | 1/a/1388:1390, 1/a/1478:1480 | Isolated non-canonical cWW pair | geometric IL_8CRE_023 NA | |
| IL_9E0N_174 | 1/a/1390:1392, 1/a/1475:1478 | No text annotation | ||
| IL_9E0N_175 | 1/a/1395:1397, 1/a/1470:1472 | Isolated non-canonical cWW pair | geometric IL_8CRE_045 NA | |
| IL_9E0N_176 | 1/a/1399:1402, 1/a/1465:1468 | Double sheared | geometric IL_8P9A_457 IL_58355.1 | |
| IL_9E0N_177 | 1/a/1407:1410, 1/a/1457:1460 | Tandem non-canonical cWW pairs | geometric IL_8P9A_327 IL_15225.1 | |
| IL_9E0N_178 | 1/a/1413:1418, 1/a/1450:1454 | No text annotation | ||
| IL_9E0N_179 | 1/a/1418:1420, 1/a/1448:1450 | Isolated non-canonical cWW pair | geometric IL_8P9A_274 IL_01003.1 | |
| IL_9E0N_180 | 1/a/1423:1426, 1/a/1443:1445 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_87316.1 | |
| IL_9E0N_181 | 1/a/1428:1431, 1/a/1439:1441 | No text annotation | geometric IL_5J7L_065 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9E0N_010 | No text annotation | ||
| IL_9E0N_015 | Double sheared | ||
| IL_9E0N_033 | No text annotation | ||
| IL_9E0N_034 | No text annotation | ||
| IL_9E0N_035 | Single bulged G | ||
| IL_9E0N_039 | No text annotation | ||
| IL_9E0N_040 | Kink-turn related | ||
| IL_9E0N_043 | Kink-turn | ||
| IL_9E0N_044 | No text annotation | ||
| IL_9E0N_045 | No text annotation | ||
| IL_9E0N_054 | Isolated non-canonical cWW pair | ||
| IL_9E0N_055 | No text annotation | ||
| IL_9E0N_056 | No text annotation | ||
| IL_9E0N_057 | No text annotation | ||
| IL_9E0N_083 | Major groove platform | ||
| IL_9E0N_089 | No text annotation | ||
| IL_9E0N_090 | No text annotation | ||
| IL_9E0N_091 | No text annotation | ||
| IL_9E0N_093 | No text annotation | ||
| IL_9E0N_094 | Double sheared | ||
| IL_9E0N_095 | No text annotation | ||
| IL_9E0N_097 | Major groove platform | ||
| IL_9E0N_116 | No text annotation | ||
| IL_9E0N_117 | Tandem non-canonical cWW pairs | ||
| IL_9E0N_118 | No text annotation | ||
| IL_9E0N_119 | No text annotation | ||
| IL_9E0N_130 | No text annotation | ||
| IL_9E0N_160 | No text annotation | ||
| IL_9E0N_161 | Minor groove platform | ||
| IL_9E0N_162 | No text annotation | ||
| IL_9E0N_163 | Single bulged U | ||
| IL_9E0N_164 | No text annotation | ||
| IL_9E0N_165 | Single stack bend | ||
| IL_9E0N_166 | No text annotation | ||
| IL_9E0N_167 | Minor groove platform | ||
| IL_9E0N_168 | No text annotation | ||
| IL_9E0N_169 | No text annotation | ||
| IL_9E0N_170 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9E0N_001 | 1/A/27:28, 1/A/562:569, 1/A/596:597 | No text annotation | geometric J3_8P9A_046 J3_68715.1 | |
| J3_9E0N_002 | 1/A/29:32, 1/A/533:549, 1/A/556:561 | No text annotation | geometric J3_4V9F_013 J3_07616.1 | |
| J3_9E0N_003 | 1/A/53:54, 1/A/67:73, 1/A/107:111 | No text annotation | geometric J3_4V9F_014 J3_01004.1 | |
| J3_9E0N_004 | 1/A/317:319, 1/A/457:463, 1/A/487:492 | No text annotation | ||
| J3_9E0N_005 | 1/A/325:331, 1/A/350:352, 1/A/443:450 | No text annotation | ||
| J3_9E0N_006 | 1/A/378:382, 1/A/398:407, 1/A/419:423 | No text annotation | geometric J3_5J7L_068 NA | |
| J3_9E0N_007 | 1/A/798:804, 1/A/888:890, 1/A/906:909 | No text annotation | geometric J3_5J7L_038 NA | |
| J3_9E0N_008 | 1/A/813:815, 1/A/847:851, 1/A/875:878 | No text annotation | geometric J3_9DFE_008 J3_69816.1 | |
| J3_9E0N_010 | 1/A/1413:1418, 1/A/1843:1845, 1/A/1857:1860 | No text annotation | geometric J3_5J7L_041 NA | |
| J3_9E0N_011 | 1/A/1421:1424, 1/A/1823:1829, 1/A/1838:1840 | No text annotation | geometric J3_7A0S_007 J3_47341.1 | |
| J3_9E0N_012 | 1/A/1459:1465, 1/A/1496:1500, 1/A/1517:1518 | No text annotation | geometric J3_7A0S_018 J3_94309.1 | |
| J3_9E0N_013 | 1/A/1531:1537, 1/A/1635:1637, 1/A/1801:1804 | No text annotation | ||
| J3_9E0N_014 | 1/A/1646:1650, 1/A/1784:1785, 1/A/1788:1793 | No text annotation | geometric J3_4V9F_017 J3_08594.1 | |
| J3_9E0N_015 | 1/A/2314:2316, 1/A/2419:2423, 1/A/2447:2452 | No text annotation | geometric J3_9DFE_014 J3_17460.1 | |
| J3_9E0N_016 | 1/A/2506:2508, 1/A/2608:2619, 1/A/2645:2651 | No text annotation | ||
| J3_9E0N_017 | 1/A/2519:2521, 1/A/2545:2547, 1/A/2556:2561 | No text annotation | geometric J3_4V9F_008 J3_05327.1 | |
| J3_9E0N_018 | 1/A/2741:2744, 1/A/2769:2771, 1/A/2785:2791 | No text annotation | geometric J3_9DFE_017 J3_32601.6 | |
| J3_9E0N_019 | 1/A/3035:3037, 1/A/3051:3057, 1/A/3103:3107 | No text annotation | ||
| J3_9E0N_020 | 1/B/9:29, 1/B/55:83, 1/B/90:108 | No text annotation | ||
| J3_9E0N_021 | 1/a/50:51, 1/a/361:367, 1/a/393:395 | No text annotation | geometric J3_4LFB_010 J3_58657.1 | |
| J3_9E0N_022 | 1/a/566:568, 1/a/631:634, 1/a/734:735 | No text annotation | geometric J3_1KUQ_001 J3_01633.1 | |
| J3_9E0N_023 | 1/a/566:568, 1/a/631:635, 1/a/731:735 | No text annotation | geometric J3_5J7L_051 NA | |
| J3_9E0N_024 | 1/a/652:653, 1/a/697:705, 1/a/712:714 | No text annotation | geometric J3_4LFB_012 J3_74074.1 | |
| J3_9E0N_025 | 1/a/806:809, 1/a/839:843, 1/a/850:856 | No text annotation | ||
| J3_9E0N_029 | 1/a/972:975, 1/a/1025:1028, 1/a/1190:1196 | No text annotation | ||
| J3_9E0N_032 | 1/a/1053:1054, 1/a/1063:1067, 1/a/1078:1082 | No text annotation | geometric J3_5J7L_009 NA | |
| J4_9E0N_001 | 1/A/269:274, 1/A/312:317, 1/A/492:494, 1/A/509:512 | No text annotation | ||
| J4_9E0N_002 | 1/A/378:382, 1/A/398:401, 1/A/405:407, 1/A/419:423 | No text annotation | ||
| J4_9E0N_003 | 1/A/1385:1391, 1/A/1409:1410, 1/A/1863:1866, 1/A/2233:2234 | No text annotation | ||
| J4_9E0N_004 | 1/A/1425:1429, 1/A/1453:1458, 1/A/1519:1520, 1/A/1815:1822 | No text annotation | ||
| J4_9E0N_005 | 1/A/1428:1429, 1/A/1453:1458, 1/A/1519:1520, 1/A/1815:1821 | No text annotation | ||
| J4_9E0N_006 | 1/A/1664:1667, 1/A/1686:1688, 1/A/1747:1751, 1/A/1762:1768 | No text annotation | ||
| J4_9E0N_007 | 1/A/1989:1993, 1/A/2005:2009, 1/A/2044:2047, 1/A/2199:2203 | No text annotation | ||
| J4_9E0N_008 | 1/A/2050:2052, 1/A/2129:2130, 1/A/2148:2157, 1/A/2191:2196 | No text annotation | ||
| J4_9E0N_009 | 1/A/2509:2513, 1/A/2567:2571, 1/A/2594:2596, 1/A/2605:2607 | No text annotation | ||
| J4_9E0N_010 | 1/A/2867:2870, 1/A/2898:2900, 1/A/2956:2959, 1/A/2993:2995 | No text annotation | ||
| J4_9E0N_011 | 1/a/111:119, 1/a/238:240, 1/a/286:289, 1/a/311:312 | No text annotation | ||
| J4_9E0N_012 | 1/a/139:141, 1/a/175:181, 1/a/207:212, 1/a/219:221 | No text annotation | ||
| J4_9E0N_013 | 1/a/555:557, 1/a/744:749, 1/a/790:801, 1/a/861:862 | No text annotation | ||
| J5_9E0N_001 | 1/A/44:51, 1/A/113:118, 1/A/127:128, 1/A/147:149, 1/A/175:177 | No text annotation | ||
| J5_9E0N_002 | 1/A/269:274, 1/A/312:319, 1/A/457:463, 1/A/487:494, 1/A/509:512 | No text annotation | ||
| J5_9E0N_003 | 1/A/618:620, 1/A/652:656, 1/A/669:671, 1/A/1376:1377, 1/A/2241:2242 | No text annotation | ||
| J5_9E0N_004 | 1/A/676:681, 1/A/783:786, 1/A/924:927, 1/A/1310:1311, 1/A/1365:1371 | No text annotation | ||
| J5_9E0N_005 | 1/A/694:697, 1/A/718:722, 1/A/729:732, 1/A/744:749, 1/A/766:771 | No text annotation | ||
| J5_9E0N_006 | 1/A/1892:1900, 1/A/1924:1925, 1/A/1968:1969, 1/A/1973:1981, 1/A/2212:2214 | No text annotation | ||
| J5_9E0N_007 | 1/A/2281:2288, 1/A/2670:2678, 1/A/2722:2731, 1/A/2806:2812, 1/A/2830:2835 | No text annotation | ||
| J5_9E0N_008 | 1/A/2297:2300, 1/A/2467:2470, 1/A/2482:2483, 1/A/2505:2506, 1/A/2651:2659 | No text annotation | ||
| J5_9E0N_009 | 1/a/40:43, 1/a/403:406, 1/a/436:440, 1/a/477:480, 1/a/525:528 | No text annotation | ||
| J5_9E0N_010 | 1/a/62:65, 1/a/102:109, 1/a/314:316, 1/a/337:339, 1/a/350:354 | No text annotation | ||
| J6_9E0N_001 | 1/A/42:43, 1/A/178:182, 1/A/213:223, 1/A/231:235, 1/A/262:267, 1/A/514:521 | No text annotation | ||
| J6_9E0N_002 | 1/A/2297:2300, 1/A/2467:2470, 1/A/2482:2483, 1/A/2505:2508, 1/A/2608:2619, 1/A/2645:2659 | No text annotation | ||
| J7_9E0N_001 | 1/A/932:938, 1/A/949:951, 1/A/1060:1063, 1/A/1089:1094, 1/A/1105:1109, 1/A/1282:1283, 1/A/1300:1305 | No text annotation | ||
| J8_9E0N_001 | 1/A/5:12, 1/A/612:618, 1/A/2242:2247, 1/A/2264:2267, 1/A/2849:2854, 1/A/3012:3015, 1/A/3027:3032, 1/A/3110:3115 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9E0N_009 | No text annotation | ||
| J3_9E0N_026 | No text annotation | ||
| J3_9E0N_027 | No text annotation | ||
| J3_9E0N_028 | No text annotation | ||
| J3_9E0N_030 | No text annotation | ||
| J3_9E0N_031 | No text annotation | ||
| J3_9E0N_033 | No text annotation | ||
| J3_9E0N_034 | No text annotation | ||
| J3_9E0N_035 | No text annotation |
Coloring options: