HL_9E0N_031

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0N_031 not in the Motif Atlas

Geometric match to HL_7A0S_031

Geometric discrepancy: 0.3159

The information below is about HL_7A0S_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9E0N|1|A|A|1336
9E0N|1|A|G|1337
9E0N|1|A|U|1338
9E0N|1|A|G|1339
9E0N|1|A|A|1340
9E0N|1|A|U|1341

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

Large ribosomal subunit protein bL20

Chain S

Large ribosomal subunit protein bL21