HL_9E0N_041

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

9E0N|1|A|A|1852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0N_041 not in the Motif Atlas

Geometric match to HL_5LM7_001

Geometric discrepancy: 0.227

The information below is about HL_5LM7_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9E0N|1|A|A|1848
9E0N|1|A|G|1849
9E0N|1|A|A|1850
9E0N|1|A|G|1851
9E0N|1|A|A|1852
9E0N|1|A|A|1853
9E0N|1|A|U|1854

Current chains

Chain A

23S rRNA

Nearby chains