HL_9E0N_053

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CUAAAAUGUAACG

Length

13 nucleotides

Bulged bases

9E0N|1|A|A|2492, 9E0N|1|A|C|2499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0N_053 not in the Motif Atlas

Geometric match to HL_4V9F_056

Geometric discrepancy: 0.1611

The information below is about HL_4V9F_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9E0N|1|A|C|2488
9E0N|1|A|U|2489
9E0N|1|A|A|2490
9E0N|1|A|A|2491
9E0N|1|A|A|2492
9E0N|1|A|A|2493
9E0N|1|A|U|2494
9E0N|1|A|G|2495
9E0N|1|A|U|2496
9E0N|1|A|A|2497
9E0N|1|A|A|2498
9E0N|1|A|C|2499
9E0N|1|A|G|2500

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

Large ribosomal subunit protein uL16

Chain X

Large ribosomal subunit protein bL27