HL_9E0N_065

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9E0N|1|A|G|2975, 9E0N|1|A|C|2979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0N_065 not in the Motif Atlas

Geometric match to HL_8CRE_066

Geometric discrepancy: 0.1978

The information below is about HL_8CRE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9E0N|1|A|C|2969
9E0N|1|A|U|2970
9E0N|1|A|G|2971
9E0N|1|A|A|2972
9E0N|1|A|A|2973
9E0N|1|A|A|2974
9E0N|1|A|G|2975
9E0N|1|A|C|2976
9E0N|1|A|A|2977
9E0N|1|A|U|2978
9E0N|1|A|C|2979
9E0N|1|A|U|2980
9E0N|1|A|A|2981
9E0N|1|A|A|2982
9E0N|1|A|G|2983

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L36

Chain G

Large ribosomal subunit protein uL6